人类病原体考氏科萨科尼亚888 - 76型菌株的全基因组序列
Complete genome sequence of human pathogen Kosakonia cowanii type strain 888-76.
作者信息
Yang Xue-Jing, Wang Sai, Cao Jun-Min, Hou Jia-Hui
机构信息
The First Affiliated Hospital of Zhejiang Chinese Medical University, Department of Clinical Laboratory, Hangzhou, PR China.
Zhejiang Sci-Tech University, College of Life Science, Zhejiang Province Key Laboratory of Plant Secondary Metabolism and Regulation, Hangzhou, PR China.
出版信息
Braz J Microbiol. 2018 Jan-Mar;49(1):16-17. doi: 10.1016/j.bjm.2017.03.010. Epub 2017 Jul 19.
Abstract
Kosakonia cowanii type strain 888-76 is a human pathogen which was originally isolated from blood as NIH group 42. In this study, we report the complete genome sequence of K. cowanii 888-76. 888-76 has 1 chromosome and 2 plasmids with a total genome size of 4,857,567bp and C+G 56.15%. This genome sequence will not only help us to understand the virulence features of K. cowanii 888-76 but also provide us the useful information for the study of evolution of Kosakonia genus.
摘要
考氏科萨科尼亚菌模式菌株888 - 76是一种人类病原体，最初作为美国国立卫生研究院第42组从血液中分离出来。在本研究中，我们报告了考氏科萨科尼亚菌888 - 76的完整基因组序列。888 - 76有1条染色体和2个质粒，基因组总大小为4,857,567bp，C + G含量为56.15%。该基因组序列不仅有助于我们了解考氏科萨科尼亚菌888 - 76的毒力特征，也为考氏科萨科尼亚属的进化研究提供了有用信息。
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本文引用的文献
1
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Nucleic Acids Res. 2016 Jan 4;44(D1):D694-7. doi: 10.1093/nar/gkv1239. Epub 2015 Nov 17.
2
ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes.ARG-ANNOT，一种新的生物信息学工具，用于发现细菌基因组中的抗生素耐药基因。
Antimicrob Agents Chemother. 2014;58(1):212-20. doi: 10.1128/AAC.01310-13. Epub 2013 Oct 21.
4
Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology.注意差距：使用 Pacific Biosciences RS 长读测序技术升级基因组。
PLoS One. 2012;7(11):e47768. doi: 10.1371/journal.pone.0047768. Epub 2012 Nov 21.
5
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy.NCBI 参考序列（RefSeq）：现状、新特性和基因组注释政策。
Nucleic Acids Res. 2012 Jan;40(Database issue):D130-5. doi: 10.1093/nar/gkr1079. Epub 2011 Nov 24.
6
Alarming β-lactamase-mediated resistance in multidrug-resistant Enterobacteriaceae.耐多药肠杆菌科中令人震惊的β-内酰胺酶介导的耐药性。
Curr Opin Microbiol. 2010 Oct;13(5):558-64. doi: 10.1016/j.mib.2010.09.006. Epub 2010 Oct 1.
7
Isolation of Enterobacter cowanii from Eucalyptus showing symptoms of bacterial blight and dieback in Uruguay.从乌拉圭出现细菌性叶枯病和枝枯病症状的桉树上分离出考氏肠杆菌。
Lett Appl Microbiol. 2009 Oct;49(4):461-5. doi: 10.1111/j.1472-765X.2009.02692.x. Epub 2009 Jul 15.
8
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J Microbiol Biotechnol. 2007 Jul;17(7):1169-76.
9
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10
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.基因本体论：生物学统一工具。基因本体论联合会。
Nat Genet. 2000 May;25(1):25-9. doi: 10.1038/75556.
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