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SimCells 的开发作为一种新型功能生物传感器底盘。

Development of SimCells as a novel chassis for functional biosensors.

机构信息

Department of Engineering Science, University of Oxford, Parks Road, Oxford, OX1 3PJ, United Kingdom.

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, S10 2TN, United Kingdom.

出版信息

Sci Rep. 2017 Aug 3;7(1):7261. doi: 10.1038/s41598-017-07391-6.

Abstract

This work serves as a proof-of-concept for bacterially derived SimCells (Simple Cells), which contain the cell machinery from bacteria and designed DNA (or potentially a simplified genome) to instruct the cell to carry out novel, specific tasks. SimCells represent a reprogrammable chassis without a native chromosome, which can host designed DNA to perform defined functions. In this paper, the use of Escherichia coli MC1000 ∆minD minicells as a non-reproducing chassis for SimCells was explored, as demonstrated by their ability to act as sensitive biosensors for small molecules. Highly purified minicells derived from E. coli strains containing gene circuits for biosensing were able to transduce the input signals from several small molecules (glucarate, acrylate and arabinose) into the production of green fluorescent protein (GFP). A mathematical model was developed to fit the experimental data for induction of gene expression in SimCells. The intracellular ATP level was shown to be important for SimCell function. A purification and storage protocol was developed to prepare SimCells which could retain their functions for an extended period of time. This study demonstrates that SimCells are able to perform as 'smart bioparticles' controlled by designed gene circuits.

摘要

这项工作是细菌衍生的 SimCells(简单细胞)的概念验证,其中包含来自细菌的细胞机制和设计 DNA(或潜在的简化基因组),以指示细胞执行新的、特定的任务。SimCells 代表一种没有天然染色体的可编程底盘,可以承载设计的 DNA 以执行定义的功能。本文探讨了使用 Escherichia coli MC1000 ∆minD minicells 作为 SimCells 的非复制底盘,正如它们能够作为小分子的敏感生物传感器所证明的那样。从含有生物传感基因回路的大肠杆菌菌株中提取的高度纯化的 minicells 能够将来自几种小分子(葡糖酸盐、丙烯酸盐和阿拉伯糖)的输入信号转导为绿色荧光蛋白(GFP)的产生。开发了一个数学模型来拟合 SimCells 中基因表达诱导的实验数据。结果表明,细胞内的 ATP 水平对 SimCell 的功能很重要。开发了一种纯化和储存方案来制备 SimCells,使其能够在较长时间内保持其功能。这项研究表明,SimCells 能够作为受设计基因回路控制的“智能生物颗粒”发挥作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/949e/5543166/53a119c17836/41598_2017_7391_Fig1_HTML.jpg

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