Frasson David, Opoku Michael, Picozzi Tara, Torossi Tanja, Balada Stefanie, Smits Theo H M, Hilber Urs
Department of Life Sciences and Facility Management, Zürich University of Applied Sciences ZHAW, Wädenswil, Switzerland.
Microbiology and Molecular Biology, Institute for Chemistry and Biotechnology (ICBT), Zürich University of Applied Sciences ZHAW, Wädenswil, Switzerland.
Int J Syst Evol Microbiol. 2017 Aug;67(8):2853-2861. doi: 10.1099/ijsem.0.002035. Epub 2017 Aug 18.
Within the frame of a biotechnological screening, we isolated two Pseudomonas strains from forest soil. 16S rRNA gene sequence analysis indicated that strain CCOS 864T shared 99.8 % similarity with Pseudomonas donghuensis HYST, while strain CCOS 865T shared 99.0 % similarity with Pseudomonas putida DSM 291T and lower similarity with other P. putida group type strains. Based on multilocus sequence analysis, the two strains were genotypically distinct from each other, each forming a separate clade. Strains CCOS 864T and CCOS 865T were Gram-stain-negative, motile and rod-shaped, growing at a temperature range of 4-37 °C. Strain CCOS 864T could be phenotypically distinguished from P. putida group species by the combination of gelatinase-positive reaction and positive growth on N-acetyl-d-glucosamine, p-hydroxyphenylacetic acid and inosine but lack of fluorescein production on King's B medium, while strain CCOS 865T could be distinguished from P. putida group species by the combination of positive growth with saccharic acid and negative growth with p-hydroxyphenylacetic acid and l-pyroglutamic acid. The major polar lipid for both strains was phosphatidylethanolamine; the major quinone was ubiquinone Q-9. DNA-DNA hybridization and average nucleotide identities confirmed the novel species status for the two strains. The DNA G+C contents of CCOS 864T and CCOS 865T were 62.1 and 63.8 mol%, respectively. The phenotypic, phylogenetic and DNA-DNA relatedness data support the suggestion that CCOS 864T and CCOS 865T represent two novel Pseudomonas species. The names Pseudomonas wadenswilerensis sp. nov. (type strain CCOS 864T=LMG 29327T) and Pseudomonas reidholzensis sp. nov. (type strain CCOS 865T=LMG 29328T) are proposed.
在生物技术筛选框架内,我们从森林土壤中分离出两株假单胞菌菌株。16S rRNA基因序列分析表明,菌株CCOS 864T与东湖假单胞菌HYST的相似度为99.8%,而菌株CCOS 865T与恶臭假单胞菌DSM 291T的相似度为99.0%,与其他恶臭假单胞菌群模式菌株的相似度较低。基于多位点序列分析,这两株菌株在基因型上彼此不同,各自形成一个单独的分支。菌株CCOS 864T和CCOS 865T革兰氏染色阴性、具运动性且呈杆状,在4-37 °C的温度范围内生长。菌株CCOS 864T在表型上可通过明胶酶阳性反应以及在N-乙酰-d-葡萄糖胺、对羟基苯乙酸和肌苷上生长阳性但在King's B培养基上不产生荧光素与恶臭假单胞菌群物种区分开来,而菌株CCOS 865T可通过在糖二酸上生长阳性以及在对羟基苯乙酸和L-焦谷氨酸上生长阴性与恶臭假单胞菌群物种区分开来。这两株菌株的主要极性脂为磷脂酰乙醇胺;主要醌为泛醌Q-9。DNA-DNA杂交和平均核苷酸同一性证实了这两株菌株的新物种地位。菌株CCOS 864T和CCOS 865T的DNA G+C含量分别为62.1和63.8 mol%。表型、系统发育和DNA-DNA相关性数据支持CCOS 864T和CCOS 865T代表两个新假单胞菌物种的建议。提议将其命名为瓦登斯维勒假单胞菌(Pseudomonas wadenswilerensis)新种(模式菌株CCOS 864T=LMG 29327T)和里德霍尔茨假单胞菌(Pseudomonas reidholzensis)新种(模式菌株CCOS 865T=LMG 29328T)。