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新型杆形硫螺旋体,从土壤中分离得到。

Spirosoma lituiforme sp. nov., isolated from soil.

机构信息

School of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea.

School of Food Science and Biotechnology, Kyungpook National University, Daegu, 41566, Republic of Korea.

出版信息

J Microbiol. 2017 Nov;55(11):856-861. doi: 10.1007/s12275-017-7255-0. Epub 2017 Oct 27.

Abstract

A Gram-staining-negative, non-motile, curved rod-shaped, aerobic bacterium, designated S1-2-4, was isolated from soil in Jeollabuk-do province, Republic of Korea, and was characterized taxonomically using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain S1-2-4 was a member of the family Cytophagaceae and most closely related to 'Spirosoma radiotolerans' DG5A (97.2%), Spirosoma fluviale MSd3 (96.4%), and Spirosoma linguale DSM 74 (96.3%). The genomic DNA G + C content of strain S1-2-4 was 49.7 mol%. The major fatty acids were summed feature 3 (C ω7c/C ω6c), C ω5c, and C, and the major polar lipid was phosphatidylethanolamine. MK-7 was the predominant respiratory quinone. Phenotypic and chemotaxonomic data supported the affiliation of strain S1-2-4 with the genus Spirosoma. DNA-DNA hybridization between strain S1-2-4 and 'Spirosoma radiotolerans' showed relatively low DNA-DNA relatedness (31%). Strain S1-2-4 could be distinguished from its closest phylogenetic neighbors based on its phenotypic, genotypic, and chemotaxonomic features. Therefore, strain S1-2-4 represents a novel member of the genus Spirosoma, for which the name Spirosoma lituiforme sp. nov. is proposed. The type strain is S1-2-4 (= KCTC 52724 = JCM 32128).

摘要

一株革兰氏阴性、非运动、弯曲杆状、需氧细菌,被命名为 S1-2-4,从韩国全罗北道的土壤中分离得到,并通过多相分类学方法进行了分类学表征。比较 16S rRNA 基因序列分析表明,菌株 S1-2-4 是噬细胞科的成员,与“Spirosoma radiotolerans”DG5A(97.2%)、Spirosoma fluviale MSd3(96.4%)和 Spirosoma linguale DSM 74(96.3%)最为密切相关。菌株 S1-2-4 的基因组 DNA G+C 含量为 49.7mol%。主要脂肪酸为 sum feature 3(C ω7c/C ω6c)、C ω5c 和 C,主要极性脂为磷脂酰乙醇胺。MK-7 是主要的呼吸醌。表型和化学分类学数据支持菌株 S1-2-4 与 Spirosoma 属的归属。菌株 S1-2-4 与“Spirosoma radiotolerans”之间的 DNA-DNA 杂交显示相对较低的 DNA-DNA 相关性(31%)。菌株 S1-2-4 可以根据其表型、基因型和化学分类特征与最接近的系统发育邻居区分开来。因此,菌株 S1-2-4 代表 Spirosoma 属的一个新成员,建议将其命名为 Spirosoma lituiforme sp. nov.。模式菌株为 S1-2-4(=KCTC 52724=JCM 32128)。

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