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粉束序列晶体学。

Pink-beam serial crystallography.

机构信息

Center for Free Electron Laser Science, DESY, Notkestrasse 85, 22607, Hamburg, Germany.

Deutsches Elektronen Synchrotron (DESY), Photon Science, Notkestrasse 85, 22607, Hamburg, Germany.

出版信息

Nat Commun. 2017 Nov 3;8(1):1281. doi: 10.1038/s41467-017-01417-3.

DOI:10.1038/s41467-017-01417-3
PMID:29097720
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5668288/
Abstract

Serial X-ray crystallography allows macromolecular structure determination at both X-ray free electron lasers (XFELs) and, more recently, synchrotron sources. The time resolution for serial synchrotron crystallography experiments has been limited to millisecond timescales with monochromatic beams. The polychromatic, "pink", beam provides a more than two orders of magnitude increased photon flux and hence allows accessing much shorter timescales in diffraction experiments at synchrotron sources. Here we report the structure determination of two different protein samples by merging pink-beam diffraction patterns from many crystals, each collected with a single 100 ps X-ray pulse exposure per crystal using a setup optimized for very low scattering background. In contrast to experiments with monochromatic radiation, data from only 50 crystals were required to obtain complete datasets. The high quality of the diffraction data highlights the potential of this method for studying irreversible reactions at sub-microsecond timescales using high-brightness X-ray facilities.

摘要

连续 X 射线晶体学允许在 X 射线自由电子激光器 (XFEL) 和最近的同步加速器源上进行大分子结构测定。连续同步加速器晶体学实验的时间分辨率受到单色光束的限制,仅达到毫秒级。多色的“粉色”光束提供了超过两个数量级的光子通量增加,因此允许在同步加速器源的衍射实验中访问更短的时间尺度。在这里,我们通过合并来自许多晶体的粉色光束衍射图案来报告两种不同蛋白质样品的结构测定,每个晶体仅使用优化用于非常低散射背景的设置采集单个 100 ps X 射线脉冲曝光。与单色辐射实验相比,仅需 50 个晶体即可获得完整的数据集。衍射数据的高质量突出了该方法在使用高亮度 X 射线设施研究亚微秒时间尺度的不可逆反应方面的潜力。

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IUCrJ. 2017 May 24;4(Pt 4):439-454. doi: 10.1107/S205225251700570X. eCollection 2017 Jul 1.
2
High-speed fixed-target serial virus crystallography.高速固定靶串行病毒晶体学
Nat Methods. 2017 Aug;14(8):805-810. doi: 10.1038/nmeth.4335. Epub 2017 Jun 19.
3
Low-dose fixed-target serial synchrotron crystallography.低剂量固定靶标串行同步辐射晶体学。
利用第四代同步加速器的微秒级X射线脉冲推进大分子结构测定。
Commun Chem. 2025 Jan 7;8(1):6. doi: 10.1038/s42004-024-01404-y.
4
Scaling and merging time-resolved pink-beam diffraction with variational inference.将时间分辨粉红光束衍射与变分推断进行尺度缩放和合并。
Struct Dyn. 2024 Nov 6;11(6):064301. doi: 10.1063/4.0000269. eCollection 2024 Nov.
5
Exploring the dynamics of allostery through multi-dimensional crystallography.通过多维晶体学探索变构动力学。
Biophys Rev. 2024 Sep 19;16(5):563-570. doi: 10.1007/s12551-024-01224-3. eCollection 2024 Oct.
6
Exploiting fourth-generation synchrotron radiation for enzyme and photoreceptor characterization.利用第四代同步辐射进行酶和光感受器表征。
IUCrJ. 2025 Jan 1;12(Pt 1):36-48. doi: 10.1107/S2052252524010868.
7
Laue-DIALS: Open-source software for polychromatic x-ray diffraction data.劳厄-DIALS:用于多色X射线衍射数据的开源软件。
Struct Dyn. 2024 Oct 2;11(5):054701. doi: 10.1063/4.0000265. eCollection 2024 Sep.
8
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bioRxiv. 2024 Jul 31:2024.07.30.605871. doi: 10.1101/2024.07.30.605871.
9
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bioRxiv. 2024 Jul 23:2024.07.23.604358. doi: 10.1101/2024.07.23.604358.
10
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bioRxiv. 2024 Jul 20:2024.07.19.604369. doi: 10.1101/2024.07.19.604369.
Acta Crystallogr D Struct Biol. 2017 Apr 1;73(Pt 4):373-378. doi: 10.1107/S2059798317002996. Epub 2017 Mar 31.
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Proc Natl Acad Sci U S A. 2017 Feb 28;114(9):2247-2252. doi: 10.1073/pnas.1609243114. Epub 2017 Feb 15.
5
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Struct Dyn. 2016 Dec 15;4(4):044003. doi: 10.1063/1.4972069. eCollection 2017 Jul.
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