Halleran Andrew D, Murray Richard M
Biology and Biological Engineering, California Institute of Technology , Pasadena, California 91125, United States.
Control and Dynamical Systems, California Institute of Technology , Pasadena, California 91125, United States.
ACS Synth Biol. 2018 Feb 16;7(2):752-755. doi: 10.1021/acssynbio.7b00376. Epub 2017 Nov 28.
Synthetic biologists have turned toward quorum systems as a path for building sophisticated microbial consortia that exhibit group decision making. Currently, however, even the most complex consortium circuits rely on only one or two quorum sensing systems, greatly restricting the available design space. High-throughput characterization of available quorum sensing systems is useful for finding compatible sets of systems that are suitable for a defined circuit architecture. Recently, cell-free systems have gained popularity as a test-bed for rapid prototyping of genetic circuitry. We take advantage of the transcription-translation cell-free system to characterize three commonly used Lux-type quorum activators, Lux, Las, and Rpa. We then compare the cell-free characterization to results obtained in vivo. We find significant genetic crosstalk in both the Las and Rpa systems and substantial signal crosstalk in Lux activation. We show that cell-free characterization predicts crosstalk observed in vivo.
合成生物学家已将群体感应系统作为构建能够展现群体决策能力的复杂微生物群落的途径。然而目前,即使是最复杂的群落电路也仅依赖一两种群体感应系统,这极大地限制了可用的设计空间。对现有群体感应系统进行高通量表征,有助于找到适用于特定电路架构的兼容系统组合。近来,无细胞系统作为遗传电路快速原型制作的试验平台而受到青睐。我们利用转录-翻译无细胞系统对三种常用的Lux型群体激活剂Lux、Las和Rpa进行表征。然后,我们将无细胞表征结果与体内实验结果进行比较。我们发现在Las和Rpa系统中均存在显著的基因串扰,在Lux激活过程中存在大量信号串扰。我们表明,无细胞表征能够预测在体内观察到的串扰。