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DNA 条形码、隐种 Aneura pinguis 的生态学和地理学及其与 Aneura maxima 和 Aneura mirabilis（苔纲、叶苔纲）的关系。

DNA barcoding, ecology and geography of the cryptic species of Aneura pinguis and their relationships with Aneura maxima and Aneura mirabilis (Metzgeriales, Marchantiophyta).

机构信息

Department of Genetics, Faculty of Biology, Adam Mickiewicz University, Poznań, Poland.

Department of Botany and Nature Protection, University of Warmia and Mazury in Olsztyn, Olsztyn, Poland.

出版信息

PLoS One. 2017 Dec 5;12(12):e0188837. doi: 10.1371/journal.pone.0188837. eCollection 2017.

DOI:10.1371/journal.pone.0188837
PMID:29206876
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5716573/
Abstract

Aneura pinguis is a thalloid liverwort species with broad geographical distribution. It is composed of cryptic species, however, the number of cryptic species within A. pinguis is not known. Five cpDNA regions (matK, rbcL, rpoC1, trnH-psbA and trnL-trnF) and the entire nuclear ITS region were studied in 130 samples of A. pinguis from different geographical regions. The relationships between the cryptic species of A. pinguis, A. maxima and A. mirabilis were analyzed. All of the examined samples were clustered into 10 clades corresponding to 10 cryptic species of A. pinguis (marked A to J). Aneura mirabilis and A. maxima were nested among different cryptic species of A. pinguis, which indicates that A. pinguis is a paraphyletic taxon. Subgroups were found in cryptic species A, B, C and E. As single barcodes, all tested DNA regions had 100% discriminant power and fulfilled DNA barcode criteria for species identification; however, the only combination detected in all subgroups was trnL-trnF with trnH-psbA or ITS2. The distances between cryptic species were 11- to 35-fold higher than intraspecific distances. In all analyzed DNA regions, the distances between most pairs of cryptic A. pinguis species were higher than between A. maxima and A. mirabilis. All cryptic species of A. pinguis clearly differed in their habitat preferences, which suggests that habitat adaptation could be the main driving force behind cryptic speciation within this taxon.

摘要

平腹足苔是一种具有广泛地理分布的叶状苔类植物。它由隐种组成，但是平腹足苔中的隐种数量尚不清楚。本研究对来自不同地理区域的 130 个平腹足苔样本的 5 个叶绿体 DNA 区域（matK、rbcL、rpoC1、trnH-psbA 和 trnL-trnF）和整个核 ITS 区进行了研究。分析了平腹足苔、平腹足苔和美丽平腹足苔的隐种关系。所有检查的样本分为 10 个分支，对应于平腹足苔的 10 个隐种（标记为 A 至 J）。美丽平腹足苔和平腹足苔嵌套在平腹足苔的不同隐种中，这表明平腹足苔是一个并系类群。在隐种 A、B、C 和 E 中发现了亚群。作为单一条形码，所有测试的 DNA 区域都具有 100%的鉴别能力，并满足物种鉴定的 DNA 条形码标准；然而，在所有亚群中仅检测到 trnL-trnF 与 trnH-psbA 或 ITS2 的组合。隐种之间的距离是种内距离的 11 到 35 倍。在所有分析的 DNA 区域中，平腹足苔隐种之间的距离大多高于平腹足苔和平腹足苔之间的距离。平腹足苔的所有隐种在其生境偏好上明显不同，这表明生境适应可能是该分类群中隐种形成的主要驱动力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7432/5716573/91ec1b687ddd/pone.0188837.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7432/5716573/60b86e1fbdc7/pone.0188837.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7432/5716573/6d08dfe94291/pone.0188837.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7432/5716573/1b8a3a402464/pone.0188837.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7432/5716573/711f16cffed3/pone.0188837.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7432/5716573/59132dbb1350/pone.0188837.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7432/5716573/91ec1b687ddd/pone.0188837.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7432/5716573/60b86e1fbdc7/pone.0188837.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7432/5716573/6d08dfe94291/pone.0188837.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7432/5716573/1b8a3a402464/pone.0188837.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7432/5716573/711f16cffed3/pone.0188837.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7432/5716573/59132dbb1350/pone.0188837.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7432/5716573/91ec1b687ddd/pone.0188837.g006.jpg

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