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BOKP:用于监测《韩国药典》中草药的DNA条形码参考文库。

BOKP: A DNA Barcode Reference Library for Monitoring Herbal Drugs in the Korean Pharmacopeia.

作者信息

Liu Jinxin, Shi Linchun, Song Jingyuan, Sun Wei, Han Jianping, Liu Xia, Hou Dianyun, Yao Hui, Li Mingyue, Chen Shilin

机构信息

Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.

Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical College, Chengde, China.

出版信息

Front Pharmacol. 2017 Dec 19;8:931. doi: 10.3389/fphar.2017.00931. eCollection 2017.

Abstract

Herbal drug authentication is an important task in traditional medicine; however, it is challenged by the limitations of traditional authentication methods and the lack of trained experts. DNA barcoding is conspicuous in almost all areas of the biological sciences and has already been added to the British pharmacopeia and Chinese pharmacopeia for routine herbal drug authentication. However, DNA barcoding for the Korean pharmacopeia still requires significant improvements. Here, we present a DNA barcode reference library for herbal drugs in the Korean pharmacopeia and developed a species identification engine named KP-IDE to facilitate the adoption of this DNA reference library for the herbal drug authentication. Using taxonomy records, specimen records, sequence records, and reference records, KP-IDE can identify an unknown specimen. Currently, there are 6,777 taxonomy records, 1,054 specimen records, 30,744 sequence records (ITS2 and ) and 285 reference records. Moreover, 27 herbal drug materials were collected from the Seoul Yangnyeongsi herbal medicine market to give an example for real herbal drugs authentications. Our study demonstrates the prospects of the DNA barcode reference library for the Korean pharmacopeia and provides future directions for the use of DNA barcoding for authenticating herbal drugs listed in other modern pharmacopeias.

摘要

草药鉴定是传统医学中的一项重要任务;然而,它受到传统鉴定方法的局限性以及缺乏专业培训人员的挑战。DNA条形码技术在几乎所有生物科学领域都备受瞩目,并且已被列入英国药典和中国药典用于常规草药鉴定。然而,韩国药典的DNA条形码技术仍需大幅改进。在此,我们展示了一个韩国药典中草药的DNA条形码参考文库,并开发了一个名为KP-IDE的物种鉴定引擎,以促进该DNA参考文库在草药鉴定中的应用。利用分类学记录、标本记录、序列记录和参考记录,KP-IDE可以识别未知标本。目前,有6777条分类学记录、1054条标本记录、30744条序列记录(ITS2和 )以及285条参考记录。此外,从首尔杨宁寺草药市场收集了27种草药材料,作为实际草药鉴定的示例。我们的研究展示了韩国药典DNA条形码参考文库的前景,并为使用DNA条形码技术鉴定其他现代药典中列出的草药提供了未来方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/67ad/5742532/092127168957/fphar-08-00931-g0001.jpg

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