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对具有利用红藻生物质生产生物丁醇潜力的物种进行基因组比较。

Genomic comparison of species with the potential of utilizing red algal biomass for biobutanol production.

作者信息

Sun Chongran, Zhang Shuangfei, Xin Fengxue, Shanmugam Sabarathinam, Wu Yi-Rui

机构信息

1Department of Biology, Shantou University, Shantou, 515063 Guangdong China.

2Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou, 515063 Guangdong China.

出版信息

Biotechnol Biofuels. 2018 Feb 15;11:42. doi: 10.1186/s13068-018-1044-9. eCollection 2018.

Abstract

BACKGROUND

Sustainable biofuels, which are widely considered as an attractive alternative to fossil fuels, can be generated by utilizing various biomass from the environment. Marine biomass, such as red algal biomass, is regarded as one potential renewable substrate source for biofuels conversion due to its abundance of fermentable sugars (e.g., galactose). Previous studies focused on the enhancement of biofuels production from different species; however, there has been limited investigation into their metabolic pathways, especially on the conversion of biofuels from galactose, via whole genomic comparison and evolutionary analysis.

RESULTS

Two galactose-utilizing Clostridial strains were examined and identified as strain WA and strain WB. Via the genomic sequencing of both strains, the comparison of the whole genome together with the relevant protein prediction of 33 other species was established to reveal a clear genome profile based upon various genomic features. Among them, five representative strains, including NCIMB14988, DSM 15410, BC1, strain WA and WB, were further discussed to demonstrate the main differences among their respective metabolic pathways, especially in their carbohydrate metabolism. The metabolic pathways involved in the generation of biofuels and other potential products (e.g., riboflavin) were also reconstructed based on the utilization of marine biomass. Finally, a batch fermentation process was performed to verify the fermentative products from strains WA and WB using 60 g/L of galactose, which is the main hydrolysate from algal biomass. It was observed that strain WA and WB could produce up to 16.98 and 12.47 g/L of biobutanol, together with 21,560 and 10,140 mL/L biohydrogen, respectively.

CONCLUSIONS

The determination of the production of various biofuels by both strains WA and WB and their genomic comparisons with other typical species on the analysis of various metabolic pathways was presented. Through the identification of their metabolic pathways, which are involved in the conversion of galactose into various potential products, such as biobutanol, the obtained results extend the current insight into the potential capability of utilizing marine red algal biomass and provide a systematic investigation into the relationship between this genus and the generation of sustainable bioenergy.

摘要

背景

可持续生物燃料被广泛认为是化石燃料的一种有吸引力的替代品,可以通过利用环境中的各种生物质来生产。海洋生物质,如红藻生物质,由于其富含可发酵糖(如半乳糖),被视为生物燃料转化的一种潜在可再生底物来源。先前的研究集中在提高不同物种的生物燃料产量;然而,通过全基因组比较和进化分析对其代谢途径,特别是从半乳糖转化为生物燃料的研究有限。

结果

对两株利用半乳糖的梭菌菌株进行了检测并鉴定为WA菌株和WB菌株。通过对这两株菌株的基因组测序,将全基因组与其他33种梭菌的相关蛋白质预测进行比较,以根据各种基因组特征揭示清晰的基因组图谱。其中,对五株代表性菌株,包括梭菌NCIMB14988、梭菌DSM 15410、梭菌BC1、WA菌株和WB菌株进行了进一步讨论,以展示它们各自代谢途径之间的主要差异,特别是在碳水化合物代谢方面。还基于海洋生物质的利用重建了参与生物燃料和其他潜在产物(如核黄素)生成的代谢途径。最后,进行了分批发酵过程,以验证WA菌株和WB菌株利用60 g/L半乳糖(藻类生物质的主要水解产物)产生的发酵产物。观察到WA菌株和WB菌株分别可产生高达16.98 g/L和12.47 g/L的生物丁醇,以及21560 mL/L和10140 mL/L的生物氢气。

结论

介绍了WA菌株和WB菌株生产各种生物燃料的情况,以及它们与其他典型梭菌物种在各种代谢途径分析上的基因组比较。通过确定它们参与将半乳糖转化为各种潜在产物(如生物丁醇)的代谢途径,所得结果扩展了目前对利用海洋红藻生物质潜力的认识,并对该属与可持续生物能源生成之间的关系进行了系统研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04ed/5815214/f86ba98ea25a/13068_2018_1044_Fig1_HTML.jpg

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