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基于单核苷酸多态性的西北大西洋和墨西哥湾入侵狮子鱼的遗传同质性。

Genetic homogeneity of the invasive lionfish across the Northwestern Atlantic and the Gulf of Mexico based on Single Nucleotide Polymorphisms.

机构信息

Rosenstiel School of Marine & Atmospheric Science (RSMAS), University of Miami, 4600 Rickenbacker Cswy, FL, 33149, Miami, USA.

Department of Biology, Geology, Physics and Inorganic Chemistry, Rey Juan Carlos University, C/Tulipán s/n, Móstoles, 28932, Spain.

出版信息

Sci Rep. 2018 Mar 22;8(1):5062. doi: 10.1038/s41598-018-23339-w.

DOI:10.1038/s41598-018-23339-w
PMID:29567984
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5864727/
Abstract

Despite the devastating impact of the lionfish (Pterois volitans) invasion on NW Atlantic ecosystems, little genetic information about the invasion process is available. We applied Genotyping by Sequencing techniques to identify 1,220 single nucleotide polymorphic sites (SNPs) from 162 lionfish samples collected between 2013 and 2015 from two areas chronologically identified as the first and last invaded areas in US waters: the east coast of Florida and the Gulf of Mexico. We used population genomic analyses, including phylogenetic reconstruction, Bayesian clustering, genetic distances, Discriminant Analyses of Principal Components, and coalescence simulations for detection of outlier SNPs, to understand genetic trends relevant to the lionfish's long-term persistence. We found no significant differences in genetic structure or diversity between the two areas (F p-values > 0.01, and t-test p-values > 0.05). In fact, our genomic analyses showed genetic homogeneity, with enough gene flow between the east coast of Florida and Gulf of Mexico to erase previous signals of genetic divergence detected between these areas, secondary spreading, and bottlenecks in the Gulf of Mexico. These findings suggest rapid genetic changes over space and time during the invasion, resulting in one panmictic population with no signs of divergence between areas due to local adaptation.

摘要

尽管狮子鱼(Pterois volitans)入侵对西北大西洋生态系统造成了毁灭性的影响,但关于入侵过程的遗传信息却很少。我们应用测序技术的基因分型方法,从 2013 年至 2015 年在佛罗里达东海岸和墨西哥湾两个被确定为美国水域最早和最晚入侵区域采集的 162 个狮子鱼样本中,鉴定出了 1220 个单核苷酸多态性位点(SNPs)。我们使用群体基因组分析,包括系统发育重建、贝叶斯聚类、遗传距离、主成分判别分析和聚合模拟,检测到了与狮子鱼长期生存相关的遗传趋势中的异常 SNP。我们没有发现两个区域之间在遗传结构或多样性方面存在显著差异(F p 值>0.01,t 检验 p 值>0.05)。实际上,我们的基因组分析显示出遗传同质性,佛罗里达东海岸和墨西哥湾之间有足够的基因流,消除了之前在这些区域之间检测到的遗传分歧、二次扩散和墨西哥湾瓶颈的信号。这些发现表明,在入侵过程中,空间和时间上的遗传变化迅速,导致由于局部适应而没有区域间分化的泛种群。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4db2/5864727/1b88c53f6a73/41598_2018_23339_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4db2/5864727/8e2b093a6dd3/41598_2018_23339_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4db2/5864727/2ebde85ffcbc/41598_2018_23339_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4db2/5864727/11af0129e78c/41598_2018_23339_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4db2/5864727/1b88c53f6a73/41598_2018_23339_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4db2/5864727/8e2b093a6dd3/41598_2018_23339_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4db2/5864727/2ebde85ffcbc/41598_2018_23339_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4db2/5864727/11af0129e78c/41598_2018_23339_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4db2/5864727/1b88c53f6a73/41598_2018_23339_Fig4_HTML.jpg

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