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在交直流电路中组合Toggle Switch 和 Repressilator 可产生不同的动力学行为。

Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors.

机构信息

Department of Mathematics, University College London, Gower Street, WC1E 6BT London, UK.

Department of Cell and Developmental Biology, University College London, Gower Street, WC1E 6BT London, UK; Department of Genetics, Evolution and Environment, University College London, Gower Street, WC1E 6BT London, UK.

出版信息

Cell Syst. 2018 Apr 25;6(4):521-530.e3. doi: 10.1016/j.cels.2018.02.008. Epub 2018 Mar 21.

Abstract

Although the structure of a genetically encoded regulatory circuit is an important determinant of its function, the relationship between circuit topology and the dynamical behaviors it can exhibit is not well understood. Here, we explore the range of behaviors available to the AC-DC circuit. This circuit consists of three genes connected as a combination of a toggle switch and a repressilator. Using dynamical systems theory, we show that the AC-DC circuit exhibits both oscillations and bistability within the same region of parameter space; this generates emergent behaviors not available to either the toggle switch or the repressilator alone. The AC-DC circuit can switch on oscillations via two distinct mechanisms, one of which induces coherence into ensembles of oscillators. In addition, we show that in the presence of noise, the AC-DC circuit can behave as an excitable system capable of spatial signal propagation or coherence resonance. Together, these results demonstrate how combinations of simple motifs can exhibit multiple complex behaviors.

摘要

虽然基因编码调控回路的结构是其功能的重要决定因素,但回路拓扑结构与其所能表现出的动态行为之间的关系还不是很清楚。在这里,我们探索了 AC-DC 电路所具备的行为范围。该电路由三个基因连接而成,它们的组合形式是一个 toggle switch 和一个 repressilator。我们使用动力系统理论表明,AC-DC 电路在同一参数空间区域内同时表现出振荡和双稳性;这产生了单独的 toggle switch 或 repressilator 所不具备的新兴行为。AC-DC 电路可以通过两种不同的机制来开启振荡,其中一种机制将相干性引入振荡器的集合中。此外,我们还表明,在存在噪声的情况下,AC-DC 电路可以表现为一个兴奋系统,能够进行空间信号传播或相干共振。总之,这些结果表明,简单的模式组合如何表现出多种复杂的行为。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4a9b/5929911/a0c4bb2dd61a/fx1.jpg

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