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超敏生长反馈驱动的合成电路中定性状态的出现。

Emergence of qualitative states in synthetic circuits driven by ultrasensitive growth feedback.

机构信息

School of Biological and Health Systems Engineering, Arizona State University, Tempe, Arizona, United States of America.

出版信息

PLoS Comput Biol. 2022 Sep 16;18(9):e1010518. doi: 10.1371/journal.pcbi.1010518. eCollection 2022 Sep.

Abstract

The mutual interactions between the synthetic gene circuits and the host growth could cause unexpected outcomes in the dynamical behaviors of the circuits. However, how the steady states and the stabilities of the gene circuits are affected by host cell growth is not fully understood. Here, we developed a mathematical model for nonlinear growth feedback based on published experimental data. The model analysis predicts that growth feedback could significantly change the qualitative states of the system. Bistability could emerge in a circuit without positive feedback, and high-order multistability (three or more steady states) arises in the self-activation and toggle switch circuits. Our results provide insight into the potential effects of ultrasensitive growth feedback on the emergence of qualitative states in synthetic circuits and the corresponding underlying mechanism.

摘要

合成基因电路与宿主生长之间的相互作用可能会导致电路动态行为产生意想不到的结果。然而,宿主细胞生长如何影响基因电路的稳态和稳定性还不完全清楚。在这里,我们基于已发表的实验数据,开发了一种基于非线性生长反馈的数学模型。模型分析预测,生长反馈可能会显著改变系统的定性状态。在没有正反馈的电路中可能会出现双稳性,而在自我激活和 toggle switch 电路中则会出现高阶多稳性(三个或更多稳态)。我们的研究结果为超敏生长反馈对合成电路中定性状态的出现及其潜在机制提供了深入的了解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a70/9518899/fed6319ae8d1/pcbi.1010518.g001.jpg

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