Department of Life Science, Chung-Ang University, Seoul 06974, Republic of Korea.
Research Group of Industrial Microbiology and Food Biotechnology, Faculty of Sciences and Bioengineering Sciences, Vrije Universiteit Brussel, B-1050 Brussels, Belgium.
Syst Appl Microbiol. 2018 Jul;41(4):324-332. doi: 10.1016/j.syapm.2018.03.003. Epub 2018 Apr 5.
Twelve Acetobacter pasteurianus-related strains with publicly available genomes in GenBank shared high 16S rRNA gene sequence similarity (>99.59%), but average nucleotide identity (ANI) and in silico DNA-DNA hybridization (DDH) values and multilocus sequence- and genome-based relatedness analyses suggested that they were divided into four different phylogenetic lineages. Relatedness analyses based on multilocus sequences, 1,194 core genes and whole-cell MALDI-TOF profiles supported that strains LMG 1590 and LMG 1591 (previously classified as the type strains of A. pasteurianus subsp. ascendens and paradoxus, respectively) and strain SLV-7 do not belong to A. pasteurianus. Strain SLV-7, isolated from Korean traditional vinegar, shared low ANI (<91.0%) and in silico DDH (44.2%) values with all other Acetobacter type strains analyzed in this study, indicating that strain SLV-7 represents a new Acetobacter species. The phenotypic and chemotaxonomic analyses confirmed these results and therefore a new species named Acetobacter oryzifermentans sp. nov. is proposed with SLV-7 (=KACC 19301=JCM 31096) as the type strain. Strains LMG 1590 and LMG 1591 shared high ANI (99.4%) and in silico DDH (96.0%) values between them, but shared low ANI (<92.3%) and in silico DDH (<49.0%) values with other type strains analyzed in this study, indicating that strains LMG 1590 and LMG 1591 should be reclassified into a new single species that should be named Acetobacter ascendens sp. nov., comb. nov., with LMD 51.1 (=LMG 1590=NCCB 51001) as its type strain.
十二株在 GenBank 中具有公开基因组的巴氏醋酸杆菌相关菌株具有高度相似的 16S rRNA 基因序列 (>99.59%),但平均核苷酸同一性 (ANI) 和基于 DNA-DNA 杂交 (DDH) 的计算值以及多位序列和全基因组相关性分析表明,它们分为四个不同的进化谱系。基于多位序列、1194 个核心基因和全细胞 MALDI-TOF 图谱的相关性分析支持 LMG 1590 和 LMG 1591 菌株(分别先前被归类为巴氏醋酸杆菌亚种 ascendens 和 paradoxus 的模式菌株)和 SLV-7 菌株不属于巴氏醋酸杆菌。从韩国传统醋中分离到的 SLV-7 菌株与本研究中分析的所有其他醋酸杆菌模式菌株的 ANI(<91.0%)和基于 DNA-DNA 杂交的计算值(44.2%)均较低,表明 SLV-7 菌株代表了一个新的醋酸杆菌种。表型和化学分类分析证实了这些结果,因此提出了一个新的物种,命名为 Acetobacter oryzifermentans sp. nov.,以 SLV-7(=KACC 19301=JCM 31096)作为模式菌株。LMG 1590 和 LMG 1591 菌株之间具有高的 ANI(99.4%)和基于 DNA-DNA 杂交的计算值(96.0%),但与本研究中分析的其他模式菌株的 ANI(<92.3%)和基于 DNA-DNA 杂交的计算值(<49.0%)较低,表明 LMG 1590 和 LMG 1591 菌株应重新归类为一个新的单一物种,应命名为 Acetobacter ascendens sp. nov.,组合新名,以 LMD 51.1(=LMG 1590=NCCB 51001)作为其模式菌株。