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氧化醋酸杆菌(Acetobacter oryzifermentans)sp. nov.,从韩国传统醋中分离得到,以及巴氏醋酸杆菌(Acetobacter pasteurianus)亚种上升(Acetobacter pasteurianus subsp. ascendens)和巴氏醋酸杆菌(Acetobacter pasteurianus)亚种悖论(Acetobacter pasteurianus subsp. paradoxus)的模式菌株的重新分类为上升醋酸杆菌(Acetobacter ascendens)sp. nov.,组合新名。

Acetobacter oryzifermentans sp. nov., isolated from Korean traditional vinegar and reclassification of the type strains of Acetobacter pasteurianus subsp. ascendens (Henneberg 1898) and Acetobacter pasteurianus subsp. paradoxus (Frateur 1950) as Acetobacter ascendens sp. nov., comb. nov.

机构信息

Department of Life Science, Chung-Ang University, Seoul 06974, Republic of Korea.

Research Group of Industrial Microbiology and Food Biotechnology, Faculty of Sciences and Bioengineering Sciences, Vrije Universiteit Brussel, B-1050 Brussels, Belgium.

出版信息

Syst Appl Microbiol. 2018 Jul;41(4):324-332. doi: 10.1016/j.syapm.2018.03.003. Epub 2018 Apr 5.

Abstract

Twelve Acetobacter pasteurianus-related strains with publicly available genomes in GenBank shared high 16S rRNA gene sequence similarity (>99.59%), but average nucleotide identity (ANI) and in silico DNA-DNA hybridization (DDH) values and multilocus sequence- and genome-based relatedness analyses suggested that they were divided into four different phylogenetic lineages. Relatedness analyses based on multilocus sequences, 1,194 core genes and whole-cell MALDI-TOF profiles supported that strains LMG 1590 and LMG 1591 (previously classified as the type strains of A. pasteurianus subsp. ascendens and paradoxus, respectively) and strain SLV-7 do not belong to A. pasteurianus. Strain SLV-7, isolated from Korean traditional vinegar, shared low ANI (<91.0%) and in silico DDH (44.2%) values with all other Acetobacter type strains analyzed in this study, indicating that strain SLV-7 represents a new Acetobacter species. The phenotypic and chemotaxonomic analyses confirmed these results and therefore a new species named Acetobacter oryzifermentans sp. nov. is proposed with SLV-7 (=KACC 19301=JCM 31096) as the type strain. Strains LMG 1590 and LMG 1591 shared high ANI (99.4%) and in silico DDH (96.0%) values between them, but shared low ANI (<92.3%) and in silico DDH (<49.0%) values with other type strains analyzed in this study, indicating that strains LMG 1590 and LMG 1591 should be reclassified into a new single species that should be named Acetobacter ascendens sp. nov., comb. nov., with LMD 51.1 (=LMG 1590=NCCB 51001) as its type strain.

摘要

十二株在 GenBank 中具有公开基因组的巴氏醋酸杆菌相关菌株具有高度相似的 16S rRNA 基因序列 (>99.59%),但平均核苷酸同一性 (ANI) 和基于 DNA-DNA 杂交 (DDH) 的计算值以及多位序列和全基因组相关性分析表明,它们分为四个不同的进化谱系。基于多位序列、1194 个核心基因和全细胞 MALDI-TOF 图谱的相关性分析支持 LMG 1590 和 LMG 1591 菌株(分别先前被归类为巴氏醋酸杆菌亚种 ascendens 和 paradoxus 的模式菌株)和 SLV-7 菌株不属于巴氏醋酸杆菌。从韩国传统醋中分离到的 SLV-7 菌株与本研究中分析的所有其他醋酸杆菌模式菌株的 ANI(<91.0%)和基于 DNA-DNA 杂交的计算值(44.2%)均较低,表明 SLV-7 菌株代表了一个新的醋酸杆菌种。表型和化学分类分析证实了这些结果,因此提出了一个新的物种,命名为 Acetobacter oryzifermentans sp. nov.,以 SLV-7(=KACC 19301=JCM 31096)作为模式菌株。LMG 1590 和 LMG 1591 菌株之间具有高的 ANI(99.4%)和基于 DNA-DNA 杂交的计算值(96.0%),但与本研究中分析的其他模式菌株的 ANI(<92.3%)和基于 DNA-DNA 杂交的计算值(<49.0%)较低,表明 LMG 1590 和 LMG 1591 菌株应重新归类为一个新的单一物种,应命名为 Acetobacter ascendens sp. nov.,组合新名,以 LMD 51.1(=LMG 1590=NCCB 51001)作为其模式菌株。

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