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高阶上位性对生物适合度景观地形的影响。

The Influence of Higher-Order Epistasis on Biological Fitness Landscape Topography.

作者信息

Weinreich Daniel M, Lan Yinghong, Jaffe Jacob, Heckendorn Robert B

机构信息

1Department of Ecology and Evolutionary Biology, Brown University, Providence, RI 02912 USA.

2Center for Computational Molecular Biology, Brown University, Providence, RI 02912 USA.

出版信息

J Stat Phys. 2018;172(1):208-225. doi: 10.1007/s10955-018-1975-3. Epub 2018 Feb 7.

Abstract

The effect of a mutation on the organism often depends on what other mutations are already present in its genome. Geneticists refer to such mutational interactions as epistasis. Pairwise epistatic effects have been recognized for over a century, and their evolutionary implications have received theoretical attention for nearly as long. However, pairwise epistatic interactions themselves can vary with genomic background. This is called higher-order epistasis, and its consequences for evolution are much less well understood. Here, we assess the influence that higher-order epistasis has on the topography of 16 published, biological fitness landscapes. We find that on average, their effects on fitness landscape declines with order, and suggest that notable exceptions to this trend may deserve experimental scrutiny. We conclude by highlighting opportunities for further theoretical and experimental work dissecting the influence that epistasis of all orders has on fitness landscape topography and on the efficiency of evolution by natural selection.

摘要

突变对生物体的影响通常取决于其基因组中已存在的其他突变。遗传学家将这种突变相互作用称为上位性。成对的上位性效应已被认识了一个多世纪,其进化意义也受到了近同样长时间的理论关注。然而,成对的上位性相互作用本身会随基因组背景而变化。这被称为高阶上位性,其对进化的影响则了解得少得多。在这里,我们评估高阶上位性对16个已发表的生物适合度景观地形的影响。我们发现,平均而言,它们对适合度景观的影响随阶数下降,并表明这一趋势的显著例外可能值得实验研究。我们通过强调进一步开展理论和实验工作的机会来总结,这些工作旨在剖析所有阶数的上位性对适合度景观地形以及自然选择进化效率的影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7993/5986866/376614263a85/10955_2018_1975_Fig1_HTML.jpg

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