转座元件家族内DNA序列进化的一个模型。
A model for DNA sequence evolution within transposable element families.
作者信息
Brookfield J F
出版信息
Genetics. 1986 Feb;112(2):393-407. doi: 10.1093/genetics/112.2.393.
Abstract
A quantitative model is proposed for the expected degree of relationship between copies of a family of transposable elements in a finite population of hosts. Special cases of the model (in which the process of homogenization of element copies either is or is not limited by transposition rate) are presented and illustrated, using data on mobile sequences from different species. It is shown that transposition will be expected, in large populations, to result in only a rather distant relationship between transposable elements at different genomic sites. Possible inadequacies of the model are suggested and quantified.
摘要
提出了一个定量模型，用于描述有限宿主群体中转座元件家族各拷贝之间的预期关联程度。利用来自不同物种的移动序列数据，展示并说明了该模型的特殊情况（即元件拷贝的同质化过程受或不受转座率限制的情况）。结果表明，在大群体中，转座预计只会导致不同基因组位点的转座元件之间存在相当远的关联。文中还指出并量化了该模型可能存在的不足之处。
相似文献
1
A model for DNA sequence evolution within transposable element families.转座元件家族内DNA序列进化的一个模型。
Genetics. 1986 Feb;112(2):393-407. doi: 10.1093/genetics/112.2.393.
2
The population biology of transposable elements.转座元件的群体生物学
Philos Trans R Soc Lond B Biol Sci. 1986 Jan 29;312(1154):217-26. doi: 10.1098/rstb.1986.0003.
3
Nonautonomous transposable elements in prokaryotes and eukaryotes.原核生物和真核生物中的非自主转座元件。
Genetica. 1992;86(1-3):47-53. doi: 10.1007/BF00133710.
4
Mobile dispersed repeated DNA elements in the Drosophila genome.果蝇基因组中的移动分散重复DNA元件。
Fed Proc. 1982 Aug;41(10):2656-8.
5
Transposable elements and the evolution of heterochromatin.转座元件与异染色质的进化
Soc Gen Physiol Ser. 1994;49:69-83.
6
The beta heterochromatic sequences flanking the I elements are themselves defective transposable elements.I元件两侧的β异染色质序列本身就是有缺陷的转座元件。
Chromosoma. 1989 Sep;98(3):215-24. doi: 10.1007/BF00329686.
7
Mobile genetic elements in animal cells and their biological significance.动物细胞中的可移动遗传元件及其生物学意义。
Eur J Biochem. 1984 Dec 3;145(2):203-20. doi: 10.1111/j.1432-1033.1984.tb08541.x.
8
The P family of transposable elements in Drosophila.果蝇中的P家族转座因子
Annu Rev Genet. 1983;17:315-44. doi: 10.1146/annurev.ge.17.120183.001531.
9
Structure and organization of the P element related sequences in Drosophila madeirensis.马德拉果蝇中P因子相关序列的结构与组织
Genome. 1996 Oct;39(5):823-9. doi: 10.1139/g96-104.
10
On the evolution and population genetics of hybrid-dysgenesis-causing transposable elements in Drosophila.关于果蝇中导致杂种不育的转座因子的进化与群体遗传学
Philos Trans R Soc Lond B Biol Sci. 1986 Jan 29;312(1154):205-15. doi: 10.1098/rstb.1986.0002.
引用本文的文献
1
Birth, death, and diversification of mobile promoters in prokaryotes.原核生物中移动启动子的产生、消亡及多样化
Genetics. 2014 May;197(1):291-9. doi: 10.1534/genetics.114.162883. Epub 2014 Feb 27.
2
Population genetics and molecular evolution of DNA sequences in transposable elements. I. A simulation framework.转座元件中 DNA 序列的群体遗传学和分子进化。I. 模拟框架。
Genetics. 2013 Nov;195(3):957-67. doi: 10.1534/genetics.113.150292. Epub 2013 Sep 3.
3
Transposable element invasions.转座元件入侵
Mob Genet Elements. 2013 Jan 1;3(1):e23920. doi: 10.4161/mge.23920.
4
Evolutionary genomics of transposable elements in Saccharomyces cerevisiae.酵母中转座元件的进化基因组学。
PLoS One. 2012;7(11):e50978. doi: 10.1371/journal.pone.0050978. Epub 2012 Nov 30.
5
Transposable element dynamics of the hAT element Herves in the human malaria vector Anopheles gambiae s.s.人类疟疾媒介冈比亚按蚊中hAT元件Herves的转座元件动态
Genetics. 2007 Aug;176(4):2477-87. doi: 10.1534/genetics.107.071811. Epub 2007 Jul 1.
6
Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster.近期的长末端重复序列（LTR）逆转座子插入与黑腹果蝇物种形成以来的非LTR插入浪潮形成对比。
Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11340-5. doi: 10.1073/pnas.0702552104. Epub 2007 Jun 25.
7
The evolution of mobile DNAs: when will transposons create phylogenies that look as if there is a master gene?移动DNA的进化：转座子何时会构建出看起来仿佛存在一个主控基因的系统发育树？
Genetics. 2006 Jun;173(2):1115-23. doi: 10.1534/genetics.104.027219.
8
Paleogenomic record of the extinction of human endogenous retrovirus ERV9.人类内源性逆转录病毒ERV9灭绝的古基因组记录。
J Virol. 2005 Jun;79(11):6997-7004. doi: 10.1128/JVI.79.11.6997-7004.2005.
9
Molecular characterization and chromosomal distribution of Galileo, Kepler and Newton, three foldback transposable elements of the Drosophila buzzatii species complex.果蝇巴氏种复合体的三种回文转座元件伽利略、开普勒和牛顿的分子特征及染色体分布
Genetics. 2005 Apr;169(4):2047-59. doi: 10.1534/genetics.104.035048. Epub 2005 Feb 3.
10
Sequence divergence within transposable element families in the Drosophila melanogaster genome.黑腹果蝇基因组中转座元件家族内的序列分歧。
Genome Res. 2003 Aug;13(8):1889-96. doi: 10.1101/gr.827603. Epub 2003 Jul 17.
本文引用的文献
1
Transposable elements in mendelian populations. I. A theory.孟德尔群体中的可移动因子。一、理论。
Genetics. 1983 Jul;104(3):457-71. doi: 10.1093/genetics/104.3.457.
2
THE NUMBER OF ALLELES THAT CAN BE MAINTAINED IN A FINITE POPULATION.有限种群中能够维持的等位基因数量。
Genetics. 1964 Apr;49(4):725-38. doi: 10.1093/genetics/49.4.725.
3
Selfish DNA: the ultimate parasite.自私的DNA：终极寄生虫。
Nature. 1980 Apr 17;284(5757):604-7. doi: 10.1038/284604a0.
4
Allelic and nonallelic homology of a supergene family.一个超级基因家族的等位基因和非等位基因同源性。
Proc Natl Acad Sci U S A. 1982 May;79(10):3251-4. doi: 10.1073/pnas.79.10.3251.
5
Theoretical study on the accumulation of selfish DNA.自私DNA积累的理论研究
Genet Res. 1983 Feb;41(1):1-15. doi: 10.1017/s0016672300021029.
6
Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster.黑腹果蝇乙醇脱氢酶基因座的核苷酸多态性
Nature. 1983;304(5925):412-7. doi: 10.1038/304412a0.
7
Some extrachromosomal circular DNAs containing the Alu family of dispersed repetitive sequences may be reverse transcripts.一些含有分散重复序列的Alu家族的染色体外环状DNA可能是逆转录产物。
J Mol Biol. 1984 Mar 25;174(1):31-40. doi: 10.1016/0022-2836(84)90363-2.
8
Evolution of Drosophila repetitive-dispersed DNA.果蝇重复分散DNA的进化
J Mol Evol. 1983;19(3-4):203-13. doi: 10.1007/BF02099967.
9
Recombination and balanced chromosome polymorphism suggested by DNA sequences 5' to the human delta-globin gene.人类δ-珠蛋白基因5'端DNA序列提示的重组和平衡染色体多态性。
Proc Natl Acad Sci U S A. 1983 Aug;80(16):5012-6. doi: 10.1073/pnas.80.16.5012.
10
Restriction map variation in the Adh region of Drosophila.果蝇乙醇脱氢酶（Adh）区域的限制性图谱变异
Proc Natl Acad Sci U S A. 1982 Sep;79(18):5631-5. doi: 10.1073/pnas.79.18.5631.
Zotero 插件