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基于RNA测序分析探究桑叶对糖尿病小鼠肝脏差异表达基因的调控作用

Mulberry Leaf Regulates Differentially Expressed Genes in Diabetic Mice Liver Based on RNA-Seq Analysis.

作者信息

Ge Qi, Zhang Shu, Chen Liang, Tang Min, Liu Lanlan, Kang Mengna, Gao Lu, Ma Shangshang, Yang Yanhua, Lv Peng, Kong Ming, Yao Qin, Feng Fan, Chen Keping

机构信息

Institute of Life Sciences, Jiangsu University, Zhenjiang, China.

School of Food and Biological Engineering, Jiangsu University, Zhenjiang, China.

出版信息

Front Physiol. 2018 Aug 7;9:1051. doi: 10.3389/fphys.2018.01051. eCollection 2018.

Abstract

The pathogenesis of diabetes mellitus is a complicated process involving much gene regulation. The molecular mechanism of mulberry ( L.) leaf in the treatment of diabetes is not fully understood. In this study, we used the Illumina HiSeq™ 2,500 platform to explore the liver transcriptome of normal mice, STZ-induced diabetic mice, and mulberry leaf-treated diabetic mice, and we obtained 52,542,956, 52,626,414, and 52,780,196 clean reads, respectively. We identified differentially expressed genes (DEGs) during the pathogenesis of diabetes in mice. The functional properties of DEGs were characterized by comparison with the GO and KEGG databases, and the results show that DEGs are mainly involved in the metabolic pathway. qRT-PCR was used to analyse 27 differential genes involved in liver expression in different groups of diabetic mice. Among the DEGs, the expression of , and other genes between the control (C) and diabetic control (DC) groups was significantly upregulated; the expression of , and was significantly downregulated; the expression of the , and genes between the C group and diabetic group treated with mulberry (DD) was significantly upregulated; the expression of , and was significantly downregulated; and the expression of and was significantly upregulated in the DC and DD groups, but , and were significantly downregulated. The results of Western blot validation showed that dynamic changes in proteins, such as IGF2, Ly6a, Grb10, and UBD, occurred to regulate the incidence of diabetes by influencing the insulin receptor substrate (IRS) signaling pathway.

摘要

糖尿病的发病机制是一个涉及众多基因调控的复杂过程。桑叶治疗糖尿病的分子机制尚未完全明确。在本研究中,我们使用Illumina HiSeq™ 2500平台探究正常小鼠、链脲佐菌素诱导的糖尿病小鼠以及桑叶治疗的糖尿病小鼠的肝脏转录组,分别获得了52,542,956、52,626,414和52,780,196条clean reads。我们鉴定了小鼠糖尿病发病过程中的差异表达基因(DEGs)。通过与GO和KEGG数据库比较对DEGs的功能特性进行了表征,结果表明DEGs主要参与代谢途径。采用qRT-PCR分析了不同组糖尿病小鼠肝脏表达中涉及的27个差异基因。在DEGs中,对照组(C)和糖尿病对照组(DC)之间的、等基因表达显著上调;、和的表达显著下调;C组和桑叶治疗的糖尿病组(DD)之间的、和基因表达显著上调;、和的表达显著下调;DC组和DD组中及的表达显著上调,但、和显著下调。蛋白质免疫印迹验证结果表明,IGF2、Ly6a、Grb10和UBD等蛋白质发生动态变化,通过影响胰岛素受体底物(IRS)信号通路来调节糖尿病的发病率。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4fe8/6090096/18b187b9eea2/fphys-09-01051-g0001.jpg

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