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铁(II)与底物结合到乙烯形成酶的热力学

Thermodynamics of Iron(II) and Substrate Binding to the Ethylene-Forming Enzyme.

作者信息

Li Mingjie, Martinez Salette, Hausinger Robert P, Emerson Joseph P

机构信息

Department of Chemistry , Mississippi State University , Mississippi State , Mississippi 39762 , United States.

出版信息

Biochemistry. 2018 Oct 2;57(39):5696-5705. doi: 10.1021/acs.biochem.8b00730. Epub 2018 Sep 18.

Abstract

The ethylene-forming enzyme (EFE), like many other 2-oxoglutarate (2OG)-dependent nonheme iron(II) oxygenases, catalyzes the oxidative decarboxylation of 2OG to succinate and CO to generate a highly reactive iron species that hydroxylates a specific alkane C-H bond, in this case targeting l-arginine (Arg) for hydroxylation. However, the prominently observed reactivity of EFE is the transformation of 2OG into ethylene and three molecules of CO. Crystallographic and biochemical studies have led to several proposed mechanisms for this 2-fold reactivity, but the detailed reaction steps are still obscure. Here, the thermodynamics associated with iron(II), 2OG, and Arg binding to EFE are studied using calorimetry (isothermal titration calorimetry and differential scanning calorimetry) to gain insight into how these binding equilibria organize the active site of EFE, which may have an impact on the O activation pathways observed in this system. Calorimetric data show that the addition of iron(II), Arg, and 2OG increases the stability over that of the apoenzyme, and there is distinctive cooperativity between substrate and cofactor binding. The energetics of binding of 2OG to Fe·EFE are consistent with a unique monodentate binding mode, which is different than the prototypical 2OG coordination mode in other 2OG-dependent oxygenases. This difference in the pre-O activation equilibria may be important for supporting the alternative ethylene-forming chemistry of EFE.

摘要

乙烯形成酶(EFE)与许多其他依赖2-氧代戊二酸(2OG)的非血红素铁(II)加氧酶一样,催化2OG氧化脱羧生成琥珀酸和CO,以产生一种高活性的铁物种,该物种可使特定的烷烃C-H键羟基化,在这种情况下,目标是使L-精氨酸(Arg)羟基化。然而,EFE显著的反应活性是将2OG转化为乙烯和三分子CO。晶体学和生化研究提出了几种关于这种双重反应活性的机制,但详细的反应步骤仍不清楚。在此,使用量热法(等温滴定量热法和差示扫描量热法)研究了与铁(II)、2OG和Arg与EFE结合相关的热力学,以深入了解这些结合平衡如何组织EFE的活性位点,这可能会对该系统中观察到的O活化途径产生影响。量热数据表明,添加铁(II)、Arg和2OG会增加其相对于脱辅基酶的稳定性,并且底物和辅因子结合之间存在独特的协同作用。2OG与Fe·EFE结合的能量学与一种独特的单齿结合模式一致,这与其他依赖2OG的加氧酶中典型的2OG配位模式不同。这种O活化前平衡的差异可能对支持EFE的替代乙烯形成化学过程很重要。

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