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墨西哥不同地理位置下星天牛属和光肩星天牛属(天牛科:小蠹科)肠道细菌群落:一项宏基因组分析

Gut Bacterial Communities of and (Curculionidae: Scolytinae): A Metagenomic Analysis across Different Geographical Locations in Mexico.

机构信息

Posgrado en Ciencias Quimicobiológicas, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, CP 11340, Mexico.

Laboratorio de Variación Biológica y Evolución, Departamento de Zoología, Escuela, Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prolongación de Carpio y Plan de Ayala s/n, Delegación Miguel Hidalgo, Mexico City, CP 11340, Mexico.

出版信息

Int J Mol Sci. 2018 Aug 30;19(9):2578. doi: 10.3390/ijms19092578.

DOI:10.3390/ijms19092578
PMID:30200218
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6164411/
Abstract

bark beetles are a worldwide significant pest of conifers. This genus comprises 20 species found in North and Central America, and Eurasia. Several studies have documented the microbiota associated with these bark beetles, but little is known regarding how the gut bacterial communities change across host range distribution. We use pyrosequencing to characterize the gut bacterial communities associated with six populations of and each across Mexico, determine the core bacteriome of both insects and infer the metabolic pathways of these communities with Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) to evaluate whether these routes are conserved across geographical locations. Our results show that the β-diversity with UniFrac unweighted varies among locations of both bark beetles mainly due to absence/presence of some rare taxa. No association is found between the pairwise phylogenetic distance of bacterial communities and geographic distance. A strict intraspecific core bacteriome is determined for each bark beetle species, but these cores are different in composition and abundance. However, both bark beetles share the interspecific core bacteriome recorded previously for the genus consisting of , , , , , and . The predictions of metabolic pathways are the same in the different localities, suggesting that they are conserved through the geographical locations.

摘要

树皮甲虫是全世界针叶树的重要害虫。这个属包括 20 种,分布在北美洲和中美洲以及欧亚大陆。有几项研究记录了与这些树皮甲虫相关的微生物群,但对于肠道细菌群落如何在宿主分布范围内发生变化知之甚少。我们使用焦磷酸测序来描述与墨西哥的六个 和 种群相关的肠道细菌群落,确定这两种昆虫的核心细菌组,并通过重建未观察状态的群落系统发育分析(PICRUSt)推断这些群落的代谢途径,以评估这些途径是否在地理区域上保持保守。我们的研究结果表明,基于未加权 UniFrac 的β多样性在两种树皮甲虫的不同地点之间存在差异,主要是由于一些稀有分类群的存在/缺失。细菌群落的成对系统发育距离与地理距离之间没有关联。为每个树皮甲虫物种确定了严格的种内核心细菌组,但这些核心组在组成和丰度上有所不同。然而,这两种树皮甲虫都共享先前为 属记录的种间核心细菌组,其中包括 、 、 、 、 和 。不同地点的代谢途径预测相同,表明它们在地理区域上是保守的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de6/6164411/512891f02369/ijms-19-02578-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de6/6164411/335317a492af/ijms-19-02578-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de6/6164411/869dcf01ea45/ijms-19-02578-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de6/6164411/11988a9b2cb9/ijms-19-02578-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de6/6164411/1f3eefe4573b/ijms-19-02578-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de6/6164411/e6554ab884a4/ijms-19-02578-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de6/6164411/512891f02369/ijms-19-02578-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de6/6164411/335317a492af/ijms-19-02578-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de6/6164411/869dcf01ea45/ijms-19-02578-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de6/6164411/11988a9b2cb9/ijms-19-02578-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de6/6164411/1f3eefe4573b/ijms-19-02578-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de6/6164411/e6554ab884a4/ijms-19-02578-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de6/6164411/512891f02369/ijms-19-02578-g006.jpg

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