Department of Obstetrics and Gynecology, The First Affiliated Hospital of Nanchang University, Nanchang, Jiangxi 330006, P.R. China.
Department of Gastroenterology, The First Affiliated Hospital of Nanchang University, Nanchang, Jiangxi 330006, P.R. China.
Mol Med Rep. 2018 Dec;18(6):5669-5682. doi: 10.3892/mmr.2018.9557. Epub 2018 Oct 15.
Growing evidence suggests that long noncoding RNAs (lncRNAs) and circular RNAs (circRNAs) are involved in the occurrence and development of tumors and fibrotic diseases. However, the integrated analysis of lncRNA and circRNA expression, alongside associated co‑expression and competing endogenous RNA (ceRNA) networks, has not yet been performed in human hypertrophic scars (HS). The present study compared the expression levels of lncRNAs, circRNAs and mRNAs in human HS and normal skin tissues by high‑throughput RNA sequencing. Numerous differentially expressed lncRNAs, circRNAs and mRNAs were detected. Subsequently, five aberrantly expressed lncRNAs and mRNAs, and six circRNAs were measured to verify the RNA sequencing results by reverse transcription‑quantitative polymerase chain reaction. Furthermore, Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses were performed for the dysregulated genes, in order to elucidate their principal functions. In addition, a coding‑noncoding gene co‑expression (CNC) network and ceRNA network were constructed for specific significantly altered genes. The CNC network analysis suggested that AC048380.1 and LINC00299 were associated with metastasis‑related genes, including inhibin subunit βA (INHBA), SMAD family member 7 (SMAD7), collagen type I α1 chain (COL1A1), transforming growth factor β3 (TGFβ3) and MYC proto‑oncogene, bHLH transcription factor (MYC). Inhibitor of DNA binding 2 was associated with the lncRNAs cancer susceptibility 11, TGFβ3‑antisense RNA 1 (AS1), INHBA‑AS1, AC048380.1, LINC00299 and LINC01969. Circ‑Chr17:50187014_50195976_‑, circ‑Chr17:50189167_50194626_‑, circ‑Chr17:50189167_ 50198002_‑ and circ‑Chr17:50189858_50195330_‑ were also associated with INHBA, SMAD7, COL1A1, TGFβ3 and MYC. COL1A1 and TGFβ3 were associated with circ‑Chr9:125337017_125337591_+ and circ‑Chr12:120782654_120784593_‑. The ceRNA network indicated that INHBA‑AS1 and circ‑Chr9:125337017_125337591_+ were ceRNAs of microRNA‑182‑5p targeting potassium voltage‑gated channel subfamily J member 6, ADAM metallopeptidase with thrombospondin type 1 motif 18, SRY‑box 11, MAGE family member L2, matrix metallopeptidase 16, thrombospondin 2, phosphodiesterase 11A and collagen type V a1 chain. These findings suggested that lncRNAs and circRNAs may act as ceRNAs, which are implicated in the pathophysiology and development of human HS, and lay a foundation for further insight into the novel regulatory mechanism of lncRNAs and circRNAs in hypertrophic scarring.
越来越多的证据表明,长非编码 RNA(lncRNA)和环状 RNA(circRNA)参与了肿瘤和纤维化疾病的发生和发展。然而,lncRNA 和 circRNA 表达的综合分析,以及相关的共表达和竞争性内源 RNA(ceRNA)网络分析,尚未在人类肥厚性瘢痕(HS)中进行。本研究通过高通量 RNA 测序比较了人 HS 组织和正常皮肤组织中 lncRNA、circRNA 和 mRNA 的表达水平。检测到大量差异表达的 lncRNA、circRNA 和 mRNA。随后,通过逆转录-定量聚合酶链反应测量了五个异常表达的 lncRNA 和 mRNA 以及六个 circRNA,以验证 RNA 测序结果。此外,还对失调基因进行了基因本体论和京都基因与基因组百科全书通路富集分析,以阐明其主要功能。此外,还构建了编码-非编码基因共表达(CNC)网络和 ceRNA 网络,用于特定显著改变的基因。CNC 网络分析表明,AC048380.1 和 LINC00299 与转移相关基因(包括抑制素亚基βA(INHBA)、SMAD 家族成员 7(SMAD7)、胶原 I 链 α1 型(COL1A1)、转化生长因子β3(TGFβ3)和原肌球蛋白,bHLH 转录因子(MYC))相关。DNA 结合蛋白 2 抑制剂与 lncRNA 癌症易感性 11、TGFβ3 反义 RNA 1(AS1)、INHBA-AS1、AC048380.1、LINC00299 和 LINC01969 相关。环状 chr17:50187014_50195976_‑、环状 chr17:50189167_50194626_‑、环状 chr17:50189167_50198002_‑和环状 chr17:50189858_50195330_‑也与 INHBA、SMAD7、COL1A1、TGFβ3 和 MYC 相关。COL1A1 和 TGFβ3 与环状 chr9:125337017_125337591_+和环状 chr12:120782654_120784593_‑相关。ceRNA 网络表明,INHBA-AS1 和环状 chr9:125337017_125337591_+是靶向钾电压门控通道亚家族 J 成员 6、ADAM 金属肽酶与血小板反应蛋白 1 型 18、SRY-框 11、MAGE 家族成员 L2、基质金属肽酶 16、血小板反应蛋白 2、磷酸二酯酶 11A 和胶原 V α1 链的 microRNA-182-5p 的 ceRNA。这些发现表明,lncRNA 和 circRNA 可能作为 ceRNA 发挥作用,参与了人类 HS 的病理生理学和发展,并为进一步深入了解 lncRNA 和 circRNA 在肥厚性瘢痕形成中的新型调控机制奠定了基础。