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同时感染肠炎沙门氏菌鼠伤寒血清型、伤寒血清型和肠炎血清型的噬菌体vB_SalM_PM10(一种Cba120病毒)的分离及基因组序列特征分析

Isolation and Genome Sequence Characterization of Bacteriophage vB_SalM_PM10, a Cba120virus, Concurrently Infecting Salmonella enterica Serovars Typhimurium, Typhi, and Enteritidis.

作者信息

Newase Sandeep, Kapadnis Balu P, Shashidhar Ravindranath

机构信息

Department of Microbiology, Savitribai Phule Pune University, Ganeshkhind, Pune, 411007, India.

Food Technology Division, Bhabha Atomic Research Centre, Mumbai, 400085, India.

出版信息

Curr Microbiol. 2019 Jan;76(1):86-94. doi: 10.1007/s00284-018-1588-8. Epub 2018 Oct 25.

Abstract

The prevalence of multidrug-resistant Salmonella is ever increasing and calls for alternatives to antibiotics. The use of phages has been anticipated to reduce the multidrug-resistant human pathogens in food environment. Salmonella phage vB_SalM_PM10 (PM10) was isolated from sewage-polluted river in India. It shows an icosahedral head (94 ± 4 nm) along with a long contractile tail (106 ± 7 × 18 ± 2 nm), a morphotype of family Ackermannviridae. Additionally, the phage displayed the features resembling to existing Cba120viruses. Phage PM10 could infect S. enterica serovars Typhimurium, Typhi, and Enteritidis. The genome sequencing analysis of phage PM10 revealed circular 158.08 kb double-stranded DNA, with the GC content of 44.6%. Two hundred and nine ORFs, 171 putative promoters, 122 rho-independent terminators, and 5 transfer RNA encoding genes were found in the genome. The genome-wide comparisons and phylogenetic analyses showed that phage PM10 is closely related to Salmonella phage PhiSH19. Comparison of the tail-spike protein sequences encoded in PM10 and PhiSH19 genome showed the variation, which might have facilitated PM10's simultaneous infectivity to aforementioned S. enterica serovars. This is a varied host range than that of PhiSH19 or any other Cba120viruses.

摘要

多重耐药沙门氏菌的流行率不断上升,因此需要抗生素的替代品。人们期望使用噬菌体来减少食品环境中的多重耐药人类病原体。沙门氏菌噬菌体vB_SalM_PM10(PM10)是从印度受污水污染的河流中分离出来的。它具有二十面体头部(94±4纳米)和长收缩尾(106±7×18±2纳米),属于阿克曼病毒科的形态类型。此外,该噬菌体表现出与现有Cba120病毒相似的特征。噬菌体PM10可以感染肠炎沙门氏菌血清型鼠伤寒沙门氏菌、伤寒沙门氏菌和肠炎沙门氏菌。噬菌体PM10的基因组测序分析显示为环状158.08 kb双链DNA,GC含量为44.6%。在基因组中发现了209个开放阅读框、171个推定启动子、122个不依赖ρ的终止子和5个编码转运RNA的基因。全基因组比较和系统发育分析表明,噬菌体PM10与沙门氏菌噬菌体PhiSH19密切相关。对PM10和PhiSH19基因组中编码的尾刺蛋白序列进行比较,发现存在差异,这可能有助于PM10同时感染上述肠炎沙门氏菌血清型。这是一个比PhiSH19或任何其他Cba120病毒更广泛的宿主范围。

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