Department of Chemistry and Biochemistry , University of Arkansas , Fayetteville , Arkansas 72701 , United States.
Biochemistry. 2019 Feb 12;58(6):633-645. doi: 10.1021/acs.biochem.8b01119. Epub 2019 Jan 3.
Transmembrane helices dominate the landscape for many membrane proteins. Often flanked by interfacial aromatic residues, these transmembrane helices also contain loops and interhelix segments, which could help in stabilizing a transmembrane orientation. Using H nuclear magnetic resonance spectroscopy to monitor bilayer-incorporated model GWALP23 family peptides, we address systematically the issue of helix fraying in relation to the dynamics and orientation of highly similar individual transmembrane helices. We inserted aromatic (Phe, Trp, Tyr, and His) or non-aromatic residues (Ala and Gly) into positions 4 and 5 adjacent to a core transmembrane helix to examine the side-chain dependency of the transmembrane orientation, dynamics, and helix integrity (extent and location of unraveling). Incorporation of [H]alanine labels enables one to assess the helicity of the core sequence and the peptide termini. For most of the helices, we observed substantial unwinding involving at least three residues at both ends. For the unique case of histidine at positions 4 and 5, an extended N-terminal unwinding was observed up to residue 7. For further investigation of the onset of fraying, we employed AGWALP23 with H labels at residues 4 and 5 and found that the number of terminal residues involved in the unwinding depends on bilayer thicknesses and helps to govern the helix dynamics. The combined results enable us to compare and contrast the extent of fraying for each related helix, as reflected by the deviation of experimental H quadrupolar splitting magnitudes of juxta-terminal alanines A3 and A21 from those represented by an ideal helix geometry.
跨膜螺旋结构在许多膜蛋白中占主导地位。这些跨膜螺旋结构通常被界面芳香族残基所包围,同时也包含环和跨膜螺旋段,这些结构有助于稳定跨膜构象。我们使用 H 核磁共振波谱学来监测双层结合的 GWALP23 家族模型肽,系统地研究了与高度相似的单个跨膜螺旋的动力学和取向有关的螺旋展开问题。我们在核心跨膜螺旋结构的第 4 位和第 5 位插入芳香族(苯丙氨酸、色氨酸、酪氨酸和组氨酸)或非芳香族残基(丙氨酸和甘氨酸),以研究侧链对跨膜取向、动力学和螺旋完整性(展开程度和位置)的依赖性。[H]丙氨酸标记的插入使我们能够评估核心序列和肽末端的螺旋性。对于大多数螺旋,我们观察到至少在两端有三个残基的明显展开。对于位置 4 和 5 的组氨酸的特殊情况,观察到了长达 7 位的延伸 N 端展开。为了进一步研究展开的起始,我们使用了在位置 4 和 5 处带有 H 标记的 AGWALP23,并发现参与展开的末端残基数量取决于双层厚度,并有助于控制螺旋动力学。综合结果使我们能够比较和对比每个相关螺旋的展开程度,这反映在近末端丙氨酸 A3 和 A21 的实验 H 四极分裂幅度与理想螺旋几何形状所代表的分裂幅度的偏差上。