UMR MEPHI, IRD, APHM, IHU Méditerranée-Infection, Aix-Marseille Université, Marseille, France.
Clinical Microbiology Department, Faculty of Medicine and Medical sciences, University of Balamand, Amioun, Lebanon.
Microbiologyopen. 2019 Jun;8(6):e00758. doi: 10.1002/mbo3.758. Epub 2019 Jan 30.
As part of the culturomics project aiming at describing the human microbiota, we report in this study the description of the new bacterial genus Raoultibacter gen. nov. that includes two new species, that is, R. massiliensis sp. nov. and R. timonensis sp. nov. The R. massiliensis type strain Marseille-P2849 was isolated from the fecal specimen of a healthy 19-year-old Saudi Bedouin, while R. timonensis type strain Marseille-P3277 was isolated from the feces of an 11-year-old pygmy female living in Congo. Strain Marseille-P2849 exhibited 91.4% 16S rRNA sequence similarity with Gordonibacter urolithinfaciens, its phylogenetic closest neighbor with standing in nomenclature. As well, strain Marseille-P3277 exhibited 97.96% 16S rRNA similarity with strain Marseille-P2849 . Both strains were Gram-positive, motile, nonspore-forming rod and form transparent microcolonies on blood agar in both anaerobic and microaerophilic atmospheres. The genome sizes of strain Marseille-P2849 and strain Marseille-P3277 were 3,657,161 bp and 4,000,215 bp, respectively. Using a taxono-genomic approach combining the phenotypic, biochemical, and genomic characteristics, we propose the genus Raoultibacter gen. nov., which contains strains Marseille-P2849 (= CSUR P2849 , = DSM 103407 ) and Marseille-P3277 (=CCUG 70680 , =CSUR P3277 ) as type strains of the species R. massiliensis sp. nov., and R. timonensis sp. nov., respectively.
作为描述人类微生物群的文化组学项目的一部分,我们在本研究中报告了新细菌属 Raoultibacter 属的描述,该属包括两个新物种,即 R. massiliensis sp. nov. 和 R. timonensis sp. nov. R. massiliensis 型菌株 Marseille-P2849 是从一名健康的 19 岁沙特贝都因粪便标本中分离出来的,而 R. timonensis 型菌株 Marseille-P3277 是从生活在刚果的一名 11 岁 pygmy 女性的粪便中分离出来的。菌株 Marseille-P2849 与最接近的分类群 Gordonibacter urolithinfaciens 的 16S rRNA 序列相似性为 91.4%。同样,菌株 Marseille-P3277 与菌株 Marseille-P2849 的 16S rRNA 相似性为 97.96%。两种菌株均为革兰氏阳性、运动性、非孢子形成的棒状,在厌氧和微需氧条件下,在血琼脂上形成透明的微菌落。菌株 Marseille-P2849 和菌株 Marseille-P3277 的基因组大小分别为 3657161 bp 和 4000215 bp。通过结合表型、生化和基因组特征的分类基因组学方法,我们提出了 Raoultibacter 属,该属包含菌株 Marseille-P2849(=CSUR P2849,=DSM 103407)和 Marseille-P3277(=CCUG 70680,=CSUR P3277),分别为 R. massiliensis sp. nov. 和 R. timonensis sp. nov. 的模式菌株。