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烟草中Hsp70基因家族的全基因组鉴定与特征分析

Genome-wide identification and characterization of Hsp70 gene family in Nicotiana tabacum.

作者信息

Song Zhaopeng, Pan Feilong, Lou Xiaoping, Wang Daibin, Yang Chao, Zhang Baoquan, Zhang Hongying

机构信息

Key Laboratory for Cultivation of Tobacco Industry, College of Tobacco Science, Henan Agricultural University, Zhengzhou, China.

China Tobacco Zhejiang Industrial Co., Ltd, Hangzhou, China.

出版信息

Mol Biol Rep. 2019 Apr;46(2):1941-1954. doi: 10.1007/s11033-019-04644-7. Epub 2019 Feb 1.

DOI:10.1007/s11033-019-04644-7
PMID:30710231
Abstract

Heat shock proteins 70 (Hsp70) constitute a highly conserved protein family of cellular chaperones widely distributed in plants, where they play a fundamental role in response to biotic and abiotic stress. Until now, genome-wide analyses of the Hsp70 gene family have been conducted for some species. However, reports about Hsp70 genes in Nicotiana tabacum are scarce. In this study, we systematically conducted genome-wide identification and expression analysis of the Hsp70 gene family in tobacco, including gene structure, classification, evolutionary relationships, promoters, and transcript levels in response to abiotic stress treatments. In all, 61 Hsp70 members were identified and classified into six groups that were mapped onto 18 chromosomes, where most were distributed on both ends of the chromosome. The conserved structures and motifs of NtHsp70 proteins in the same subfamily were highly consistent. At least 15 pairs of NtHsp70 genes underwent gene duplication by segment and tandem duplications. Most NtHsp70 proteins contained N-terminal hexokinase conserved motifs. Phylogenetic analysis showed that most species expanded according to their own species-specific approach during the evolution of Hsp70s. Tissue-specific expression analysis indicated that all NtHsp70 genes were involved in at least one or more abiotic stress responses, highlighting the wide participation of NtHsp70 genes in environmental adaptation. This is the first genome-wide analysis of Hsp70 in N. tabacum. These results indicate that each NtHsp70 member fulfilled distinct functions in response to various abiotic stresses.

摘要

热休克蛋白70(Hsp70)构成了一个高度保守的细胞伴侣蛋白家族,广泛分布于植物中,在植物应对生物和非生物胁迫中发挥着重要作用。到目前为止,已经对一些物种进行了Hsp70基因家族的全基因组分析。然而,关于烟草中Hsp70基因的报道却很少。在本研究中,我们系统地对烟草中的Hsp70基因家族进行了全基因组鉴定和表达分析,包括基因结构、分类、进化关系、启动子以及对非生物胁迫处理的转录水平。总共鉴定出61个Hsp70成员,并将其分为六组,这些成员分布在18条染色体上,其中大多数分布在染色体的两端。同一亚家族中NtHsp70蛋白的保守结构和基序高度一致。至少有15对NtHsp70基因通过片段重复和串联重复发生了基因复制。大多数NtHsp70蛋白含有N端己糖激酶保守基序。系统发育分析表明,在Hsp70的进化过程中,大多数物种按照其自身物种特异性的方式进行了扩展。组织特异性表达分析表明,所有NtHsp70基因都参与了至少一种或多种非生物胁迫反应,这突出了NtHsp70基因在环境适应中的广泛参与。这是首次对烟草中的Hsp70进行全基因组分析。这些结果表明,每个NtHsp70成员在应对各种非生物胁迫时都发挥着不同的功能。

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