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环状RNA已成为常态:对重组组的一种观点。

CircRNAs Are Here to Stay: A Perspective on the Recombinome.

作者信息

Dal Molin Anna, Bresolin Silvia, Gaffo Enrico, Tretti Caterina, Boldrin Elena, Meyer Lueder H, Guglielmelli Paola, Vannucchi Alessandro M, Te Kronnie Geertruij, Bortoluzzi Stefania

机构信息

Department of Molecular Medicine, University of Padua, Padua, Italy.

Department of Women's and Children's Health, University of Padua, Padua, Italy.

出版信息

Front Genet. 2019 Feb 13;10:88. doi: 10.3389/fgene.2019.00088. eCollection 2019.

DOI:10.3389/fgene.2019.00088
PMID:30815012
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6382020/
Abstract

Chromosomal translocations harbored by cancer genomes are important oncogenic drivers. In rearranged acute leukemia (MLLre) fuses with over 90 partner genes. Mechanistic studies provided clues of MLL fusion protein leukemogenic potential, but models failed to fully recapitulate the disease. Recently, expression of oncogenic fusion circular RNAs (f-circ) by fusion was proven. This discovery, together with emerging data on the importance and diversity of circRNAs formed the incentive to study the circRNAs of the recombinome. Through interactions with other RNAs, such as microRNAs, and with proteins, circRNAs regulate cellular processes also related to cancer development. CircRNAs can translate into functional peptides too. and most of the 90 translocation partners do express circRNAs and exploration of our RNA-seq dataset of sorted blood cell populations provided new data on alternative circular isoform generation and expression variability of circRNAs of the recombinome. Further, we provided evidence that rearrangements of and three of the main translocation partner genes can impact circRNA expression, supported also by preliminary observations in leukemic cells. The emerging picture underpins the view that circRNAs are worthwhile to be considered when studying MLLre leukemias and provides a new perspective on the impact of chromosomal translocations in cancer cells at large.

摘要

癌症基因组中存在的染色体易位是重要的致癌驱动因素。在重排急性白血病(MLLre)中,MLL与90多种伙伴基因融合。机制研究为MLL融合蛋白的致白血病潜力提供了线索,但模型未能完全重现该疾病。最近,已证实通过融合产生致癌融合环状RNA(f-circ)。这一发现,连同关于环状RNA重要性和多样性的新出现数据,激发了对MLL重组基因组环状RNA的研究。通过与其他RNA(如微小RNA)以及蛋白质相互作用,环状RNA调节与癌症发展相关的细胞过程。环状RNA也可以翻译成功能性肽。90种MLL易位伙伴基因中的大多数确实表达环状RNA,对我们分选血细胞群体的RNA测序数据集的探索提供了关于MLL重组基因组环状RNA的替代性环状异构体产生和表达变异性的新数据。此外,我们提供了证据表明MLL及其三个主要易位伙伴基因的重排可影响环状RNA表达,白血病细胞中的初步观察结果也支持这一点。这一新出现的情况支持了这样一种观点,即在研究MLLre白血病时环状RNA值得考虑,并为染色体易位对癌细胞的影响提供了一个新的视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec4e/6382020/8343b1d5ecbd/fgene-10-00088-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec4e/6382020/610025a9be22/fgene-10-00088-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec4e/6382020/8343b1d5ecbd/fgene-10-00088-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec4e/6382020/610025a9be22/fgene-10-00088-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec4e/6382020/8343b1d5ecbd/fgene-10-00088-g002.jpg

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本文引用的文献

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The "Never-Ending" Mouse Models for MLL-Rearranged Acute Leukemia Are Still Teaching Us.用于MLL重排急性白血病的“永不停歇”小鼠模型仍在为我们提供知识。
Hemasphere. 2018 Jun 19;2(4):e57. doi: 10.1097/HS9.0000000000000057. eCollection 2018 Aug.
2
Chromosomal Translocation Formation Is Sufficient to Produce Fusion Circular RNAs Specific to Patient Tumor Cells.染色体易位的形成足以产生患者肿瘤细胞特有的融合环状RNA。
iScience. 2018 Jul 27;5:19-29. doi: 10.1016/j.isci.2018.06.007. Epub 2018 Jun 19.
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Circular RNA expression in human hematopoietic cells is widespread and cell-type specific.
环状 RNA 与癌症。
Nat Rev Cancer. 2024 Sep;24(9):597-613. doi: 10.1038/s41568-024-00721-7. Epub 2024 Jul 29.
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Functional relevance of circRNA aberrant expression in pediatric acute leukemia with KMT2A::AFF1 fusion.具有KMT2A::AFF1融合的小儿急性白血病中circRNA异常表达的功能相关性
Blood Adv. 2024 Mar 12;8(5):1305-1319. doi: 10.1182/bloodadvances.2023011291.
5
Outlier Expression of Isoforms by Targeted or Total RNA Sequencing Identifies Clinically Significant Genomic Variants in Hematolymphoid Tumors.靶向或总 RNA 测序鉴定血液淋巴肿瘤中具有临床意义的基因组变异的异构体的异常表达。
J Mol Diagn. 2023 Sep;25(9):665-681. doi: 10.1016/j.jmoldx.2023.06.007. Epub 2023 Jul 5.
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Discovery of fusion circular RNAs in leukemia with KMT2A::AFF1 rearrangements by the new software CircFusion.通过新软件 CircFusion 发现具有 KMT2A::AFF1 重排的白血病中的融合环状 RNA。
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