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捕捉纤维介质模拟中 3D 大应变欧拉弯曲细丝动力学;树突状肌动蛋白网络压缩坍塌的示例。

Capturing 3D large-strain Euler-bending filament dynamics in fibrous media simulations; sample case of compression collapse in dendritic actin network.

机构信息

Department of Chemical Engineering, Howard University, Washington, DC, 2005, USA.

出版信息

Sci Rep. 2019 Mar 8;9(1):3990. doi: 10.1038/s41598-019-40430-y.

Abstract

Cytoskeletal networks to transmission towers are comprised of slender elements. Slender filaments bend and buckle more easily than stretch. Therefore a deforming network is expected to exhaust all possible bending-based modes before engaging filament stretch. While the large-strain bending critically determines fibrous-media response, simulations use small-strain and jointed approximations. At low resolution, these approximations inflate bending resistance and delay buckling onset. The proposed string-of-continuous-beams (SOCB) approach captures 3D nonlinear Euler bending of filaments with high fidelity at low cost. Bending geometry (i.e. angles and its differentials) is solved as primary variables, to fit a 5 order polynomial of the contour angle. Displacement, solved simultaneously as length conservation, is predicted with C3 and C6 smoothness between and within segments, using only 2 nodes. In the chosen analysis frame, in-plane and out-plane moments can be decoupled for arbitrarily-curved segments. Complex crosslink force-transfers can be specified. Simulations show that when a daughter branch is appended, the buckling resistance of a filament changes from linear to nonlinear before reversible collapse. An actin outcrop with 8 generations of mother-daughter branching produced the linear, nonlinear, and collapse regimes observed in compression experiments. 'Collapse' was a redistribution of outcrop forces following the buckling of few strands.

摘要

细胞骨架网络与传输塔由细长的元件组成。细长的丝容易弯曲和弯曲,而不容易拉伸。因此,预计变形的网络将在参与丝拉伸之前耗尽所有可能的基于弯曲的模式。虽然大应变弯曲对纤维介质的响应至关重要,但模拟使用小应变和节理近似。在低分辨率下,这些近似会增加弯曲阻力并延迟屈曲的发生。所提出的连续梁串(SOCB)方法以低成本以高精度捕捉细丝的 3D 非线性欧拉弯曲。弯曲几何形状(即角度及其微分)作为主要变量求解,以拟合轮廓角度的 5 阶多项式。位移作为长度守恒同时求解,在段之间和段内使用 C3 和 C6 光滑度进行预测,仅使用 2 个节点。在所选择的分析框架中,对于任意弯曲的段,可以解耦面内和面外力矩。可以指定复杂的交联力传递。模拟表明,当添加一个子分支时,细丝的屈曲阻力在不可逆坍塌之前从线性变为非线性。一个具有 8 代母-子分支的肌动蛋白露头产生了在压缩实验中观察到的线性、非线性和坍塌区。“坍塌”是在少数股线屈曲后露头力的重新分配。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7bd0/6408500/0ddc2e02df9e/41598_2019_40430_Fig1_HTML.jpg

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