Freitas Dhara Y, Araújo Susana, Folador Adriana R C, Ramos Rommel T J, Azevedo Juliana S N, Tacão Marta, Silva Artur, Henriques Isabel, Baraúna Rafael A
Laboratory of Genomics and Bioinformatics, Center of Genomics and Systems Biology, Institute of Biological Sciences, Federal University of Pará, Belém, Brazil.
Department of Biology and CESAM, University of Aveiro, Aveiro, Portugal.
Front Microbiol. 2019 Feb 28;10:364. doi: 10.3389/fmicb.2019.00364. eCollection 2019.
Aquatic systems have been described as antibiotic resistance reservoirs, where water may act as a vehicle for the spread of resistant bacteria and resistance genes. We evaluated the occurrence and diversity of third generation cephalosporin-resistant gram-negative bacteria in a lake in the Amazonia region. This water is used for human activities, including consumption after appropriate treatment. Eighteen samples were obtained from six sites in October 2014. Water quality parameters were generally within the legislation limits. Thirty-three bacterial isolates were identified as ( = 7 isolates), , , and ( = 5 each), ( = 4), ( = 3), and , , , (1 isolate each). Twenty nine out of 33 isolates (88%) were resistant to most beta-lactams, except carbapenems, and 88% ( = 29) were resistant to antibiotics included in at least three different classes. Among the beta-lactamase genes inspected, the was the most prevalent ( = 12 positive isolates), followed by ( = 5) and ( = 4). ( = 5), ( = 1) and ( = 1) variants were detected in conserved genomic contexts: flanked by IS and Orf477; flanked by IS and IS; and associated to an ISCR element. For 4 strains the transfer of was confirmed by conjugation assays. Compared with the recipient, the transconjugants showed more than 500-fold increases in the MICs of cefotaxime and 16 to 32-fold increases in the MICs of ceftazidime. Two isolates ( APC43A and APC25) were selected for whole genome analysis. APC43A was predicted as a pathogen of the high-risk clone ST471 and serotype O154:H18. as well as determinants related to efflux of antibiotics, were noted in APC43A genome. APC25 was susceptible to carbapenems and antibiotic resistance genes detected in its genome were intrinsic determinants (e.g., and ). The strain was not predicted as a human pathogen and belongs to a new sequence type. Operons related to metal resistance were predicted in both genomes as well as pathogenicity and resistance islands. Results suggest a high dissemination of ESBL-producing bacteria in Lake Água Preta which, although not presenting characteristics of a strongly impacted environment, contains multi-drug resistant pathogenic strains.
水生系统被描述为抗生素耐药性储存库,其中水可能充当耐药细菌和耐药基因传播的媒介。我们评估了亚马逊地区一个湖泊中第三代头孢菌素耐药革兰氏阴性菌的存在情况和多样性。该湖水用于人类活动,包括经过适当处理后饮用。2014年10月从六个地点采集了18个样本。水质参数总体上在法定限值内。33株细菌分离株被鉴定为(=7株)、、、和(各5株)、(4株)、(3株)以及、、、(各1株)。33株分离株中有29株(88%)对大多数β-内酰胺类抗生素耐药,但对碳青霉烯类敏感,且88%(=29)对至少三类抗生素耐药。在所检测的β-内酰胺酶基因中,最普遍(=12株阳性分离株),其次是(=5株)和(=4株)。、(=1株)和(=1株)变体在保守基因组背景中被检测到:两侧分别是IS和Orf477;两侧分别是IS和IS;与一个ISCR元件相关。通过接合试验证实了4株菌株的转移。与受体相比,接合子对头孢噻肟的最低抑菌浓度(MIC)增加了500倍以上,对头孢他啶的MIC增加了16至32倍。选择了两株分离株(APC43A和APC25)进行全基因组分析。APC被预测为高危克隆ST471和血清型O154:H18的病原体。在APC43A基因组中发现了以及与抗生素外排相关的决定因素。APC25对碳青霉烯类敏感,其基因组中检测到的抗生素耐药基因是内在决定因素(如和)。该菌株未被预测为人类病原体,属于一种新的序列类型。在两个基因组中均预测到与金属抗性、致病性和抗性岛相关的操纵子。结果表明,阿瓜普雷塔湖中产超广谱β-内酰胺酶(ESBL)细菌广泛传播,尽管该湖没有呈现出受严重影响环境的特征,但含有多重耐药病原菌。