Nanoscale Subsynaptic Domains Underlie the Organization of the Inhibitory Synapse.

Inhibitory synapses mediate the majority of synaptic inhibition in the brain, thereby controlling neuronal excitability, firing, and plasticity. Although essential for neuronal function, the central question of how these synapses are organized at the subsynaptic level remains unanswered. Here, we use three-dimensional (3D) super-resolution microscopy to image key components of the inhibitory postsynaptic domain and presynaptic terminal, revealing that inhibitory synapses are organized into nanoscale subsynaptic domains (SSDs) of the gephyrin scaffold, GABARs and the active-zone protein Rab3-interacting molecule (RIM). Gephyrin SSDs cluster GABAR SSDs, demonstrating nanoscale architectural interdependence between scaffold and receptor. GABAR SSDs strongly associate with active-zone RIM SSDs, indicating an important role for GABAR nanoscale organization near sites of GABA release. Finally, we find that in response to elevated activity, synapse growth is mediated by an increase in the number of postsynaptic SSDs, suggesting a modular mechanism for increasing inhibitory synaptic strength.