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端到端 DNA 数据存储自动化的演示。

Demonstration of End-to-End Automation of DNA Data Storage.

机构信息

School of Computer Science and Engineering, University of Washington, Seattle, Washington, USA.

Microsoft Research, Redmond, Washington, USA.

出版信息

Sci Rep. 2019 Mar 21;9(1):4998. doi: 10.1038/s41598-019-41228-8.

Abstract

Synthetic DNA has emerged as a novel substrate to encode computer data with the potential to be orders of magnitude denser than contemporary cutting edge techniques. However, even with the help of automated synthesis and sequencing devices, many intermediate steps still require expert laboratory technicians to execute. We have developed an automated end-to-end DNA data storage device to explore the challenges of automation within the constraints of this unique application. Our device encodes data into a DNA sequence, which is then written to a DNA oligonucleotide using a custom DNA synthesizer, pooled for liquid storage, and read using a nanopore sequencer and a novel, minimal preparation protocol. We demonstrate an automated 5-byte write, store, and read cycle with a modular design enabling expansion as new technology becomes available.

摘要

合成 DNA 已成为一种新型的计算机数据编码底物,其密度有望比当前最先进的技术高出几个数量级。然而,即使有自动化合成和测序设备的帮助,许多中间步骤仍然需要专家实验室技术人员来执行。我们开发了一种自动化的端到端 DNA 数据存储设备,以探索在这种独特应用的限制下自动化所面临的挑战。我们的设备将数据编码成 DNA 序列,然后使用定制的 DNA 合成器将其写入 DNA 寡核苷酸,将其汇集进行液体存储,并使用纳米孔测序仪和一种新颖的最小化制备方案进行读取。我们展示了一个自动化的 5 字节写入、存储和读取循环,其模块化设计能够随着新技术的出现而扩展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2041/6428863/347d574286b7/41598_2019_41228_Fig1_HTML.jpg

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