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莱古黄杆菌新种,一种从青藏高原莱古冰川分离出的嗜冷细菌。

Flavobacterium laiguense sp. nov., a psychrophilic bacterium isolated from Laigu glacier on the Tibetan Plateau.

作者信息

Yang Lei-Lei, Liu Qing, Liu Hong-Can, Zhou Yu-Guang, Xin Yu-Hua

机构信息

1​China General Microbiological Culture Collection Center, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China.

2​State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China.

出版信息

Int J Syst Evol Microbiol. 2019 Jun;69(6):1821-1825. doi: 10.1099/ijsem.0.003400. Epub 2019 Apr 17.

Abstract

One bacterial strain, denoted as LB2P30, was isolated from Laigu glacier located on the Tibetan Plateau, PR China. Strain LB2P30 was an aerobic, non-motile, rod-shaped, yellow-pigmented and Gram-stain-negative bacterium. The temperature range for growth was 4-20 °C (optimum, 14 °C). The phylogenetic analysis based on partial 16S rRNA gene sequences showed that strain LB2P30 belonged to the genus Flavobacterium and was most similar to Flavobacterium fluvii (98.12 %) and Flavobacterium limicola (97.91 %). The average nucleotide identity values between strain LB2P30 and its closest relatives, F. fluvii DSM 19978 and F. limicola DSM 15094, were 76.73 % and 77.40 %, respectively. Cells of strain LB2P30 contained summed feature 3 (comprising C16:1ω7c and/or C16:1ω6c) and iso-C15 : 0 as the predominant fatty acids and menaquinone-6 as the sole menaquinone. The genomic DNA G+C content was 34.74 mol%. Based on the phenotypic, chemotaxonomic, genotypic and phylogenetic characteristics, we propose strain LB2P30 as a novel species of the genus Flavobacterium with the nomenclature of Flavobacteriumlaiguense sp. nov. The type strain is LB2P30 (=CGMCC 1.11271=NBRC 113059).

摘要

从中国青藏高原的来古冰川中分离出一株细菌,命名为LB2P30。菌株LB2P30是一种需氧、无运动性、杆状、黄色色素沉着且革兰氏染色阴性的细菌。其生长温度范围为4-20°C(最适温度为14°C)。基于部分16S rRNA基因序列的系统发育分析表明,菌株LB2P30属于黄杆菌属,与河流黄杆菌(98.12%)和泥滩黄杆菌(97.91%)最为相似。菌株LB2P30与其最亲近的亲缘种河流黄杆菌DSM 19978和泥滩黄杆菌DSM 15094之间的平均核苷酸同一性值分别为76.73%和77.40%。菌株LB2P30的细胞含有特征性脂肪酸总和3(包含C16:1ω7c和/或C16:1ω6c)和异-C15:0作为主要脂肪酸,以及甲基萘醌-6作为唯一的甲基萘醌。基因组DNA的G+C含量为34.74 mol%。基于表型、化学分类、基因型和系统发育特征,我们提议将菌株LB2P30作为黄杆菌属的一个新物种,命名为来古黄杆菌(Flavobacterium laiguense sp. nov.)。模式菌株为LB2P30(=CGMCC 1.11271=NBRC 113059)。

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