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Details in the evaluation of circular RNA detection tools: Reply to Chen and Chuang.

作者信息

Zeng Xiangxiang, Lin Wei, Guo Maozu, Zou Quan

机构信息

Shenzhen Research Institute of Xiamen University, Shenzhen, China.

School of Information Science and Engineering, Xiamen University, Xiamen, China.

出版信息

PLoS Comput Biol. 2019 Apr 25;15(4):e1006916. doi: 10.1371/journal.pcbi.1006916. eCollection 2019 Apr.

DOI:10.1371/journal.pcbi.1006916
PMID:31022173
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6527241/
Abstract
摘要

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本文引用的文献

1
Comment on "A comprehensive overview and evaluation of circular RNA detection tools".关于《环状RNA检测工具的全面概述与评估》的评论
PLoS Comput Biol. 2019 May 31;15(5):e1006158. doi: 10.1371/journal.pcbi.1006158. eCollection 2019 May.
2
A comprehensive overview and evaluation of circular RNA detection tools.环状RNA检测工具的全面概述与评估
PLoS Comput Biol. 2017 Jun 8;13(6):e1005420. doi: 10.1371/journal.pcbi.1005420. eCollection 2017 Jun.
3
Detecting circular RNAs: bioinformatic and experimental challenges.环状RNA的检测：生物信息学及实验挑战
Nat Rev Genet. 2016 Oct 14;17(11):679-692. doi: 10.1038/nrg.2016.114.
4
Diverse alternative back-splicing and alternative splicing landscape of circular RNAs.环状RNA多样的替代性反向剪接和替代性剪接图谱
Genome Res. 2016 Sep;26(9):1277-87. doi: 10.1101/gr.202895.115. Epub 2016 Jun 30.
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Circular RNA profile in gliomas revealed by identification tool UROBORUS.通过鉴定工具UROBORUS揭示的胶质瘤中的环状RNA图谱。
Nucleic Acids Res. 2016 May 19;44(9):e87. doi: 10.1093/nar/gkw075. Epub 2016 Feb 11.
6
Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development.基于统计学的剪接检测揭示了人类胎儿发育过程中环状RNA的神经富集和组织特异性诱导。
Genome Biol. 2015 Jun 16;16(1):126. doi: 10.1186/s13059-015-0690-5.
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CIRI: an efficient and unbiased algorithm for de novo circular RNA identification.CIRI：一种用于从头鉴定环状RNA的高效且无偏差的算法。
Genome Biol. 2015 Jan 13;16(1):4. doi: 10.1186/s13059-014-0571-3.
8
Exon circularization requires canonical splice signals.外显子环化需要典型的剪接信号。
Cell Rep. 2015 Jan 6;10(1):103-11. doi: 10.1016/j.celrep.2014.12.002. Epub 2014 Dec 24.
9
circBase: a database for circular RNAs.circBase：一个环状RNA数据库。
RNA. 2014 Nov;20(11):1666-70. doi: 10.1261/rna.043687.113. Epub 2014 Sep 18.
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Cell-type specific features of circular RNA expression.环状 RNA 表达的细胞类型特异性特征。
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