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环状RNA的鉴定进展及人类疾病中的环状RNA研究

Advances in the Identification of Circular RNAs and Research Into circRNAs in Human Diseases.

作者信息

Jiao Shihu, Wu Song, Huang Shan, Liu Mingyang, Gao Bo

机构信息

Hainan Key Laboratory for Computational Science and Application, Hainan Normal University, Haikou, China.

Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China, Quzhou, China.

出版信息

Front Genet. 2021 Mar 19;12:665233. doi: 10.3389/fgene.2021.665233. eCollection 2021.

DOI:10.3389/fgene.2021.665233
PMID:33815488
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8017306/
Abstract

Circular RNAs (circRNAs) are a class of endogenous non-coding RNAs (ncRNAs) with a closed-loop structure that are mainly produced by variable processing of precursor mRNAs (pre-mRNAs). They are widely present in all eukaryotes and are very stable. Currently, circRNA studies have become a hotspot in RNA research. It has been reported that circRNAs constitute a significant proportion of transcript expression, and some are significantly more abundantly expressed than other transcripts. CircRNAs have regulatory roles in gene expression and critical biological functions in the development of organisms, such as acting as microRNA sponges or as endogenous RNAs and biomarkers. As such, they may have useful functions in the diagnosis and treatment of diseases. CircRNAs have been found to play an important role in the development of several diseases, including atherosclerosis, neurological disorders, diabetes, and cancer. In this paper, we review the status of circRNA research, describe circRNA-related databases and the identification of circRNAs, discuss the role of circRNAs in human diseases such as colon cancer, atherosclerosis, and gastric cancer, and identify remaining research questions related to circRNAs.

摘要

环状RNA(circRNAs)是一类具有闭环结构的内源性非编码RNA(ncRNAs),主要由前体mRNA(pre-mRNAs)的可变加工产生。它们广泛存在于所有真核生物中,并且非常稳定。目前,circRNA研究已成为RNA研究的热点。据报道,circRNAs在转录本表达中占很大比例,有些circRNAs的表达量明显高于其他转录本。circRNAs在基因表达中具有调控作用,在生物体发育中具有关键生物学功能,例如作为微小RNA海绵或作为内源性RNA和生物标志物。因此,它们可能在疾病的诊断和治疗中具有有用的功能。已发现circRNAs在多种疾病的发生发展中起重要作用,包括动脉粥样硬化、神经疾病、糖尿病和癌症。在本文中,我们综述了circRNA的研究现状,描述了与circRNA相关的数据库以及circRNAs的鉴定方法,讨论了circRNAs在人类疾病如结肠癌、动脉粥样硬化和胃癌中的作用,并确定了与circRNAs相关的剩余研究问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5f5/8017306/35400b81fa58/fgene-12-665233-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5f5/8017306/ef094067beab/fgene-12-665233-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5f5/8017306/35400b81fa58/fgene-12-665233-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5f5/8017306/ef094067beab/fgene-12-665233-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5f5/8017306/35400b81fa58/fgene-12-665233-g002.jpg

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Recent advances in investigation of circRNA/lncRNA-miRNA-mRNA networks through RNA sequencing data analysis.

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PCirc: random forest-based plant circRNA identification software.PCirc:基于随机森林的植物 circRNA 鉴定软件。
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A deep learning approach for filtering structural variants in short read sequencing data.深度学习方法在短读测序数据中过滤结构变异。
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Identifying Antioxidant Proteins by Using Amino Acid Composition and Protein-Protein Interactions.利用氨基酸组成和蛋白质-蛋白质相互作用鉴定抗氧化蛋白
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Evaluation of circ_0002232 and circ-vimentin gene expressions as valuable biomarkers in acute myeloid leukemia patients.评估circ_0002232和circ-波形蛋白基因表达作为急性髓系白血病患者有价值生物标志物的情况。
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Investigating the biomarker value of circRNAs in the diagnosis of colorectal cancer: a systematic review.环状RNA在结直肠癌诊断中的生物标志物价值研究:一项系统综述
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