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利用固态中加速弛豫弥散实验定量研究大蛋白复合物中的微秒交换。

Quantifying Microsecond Exchange in Large Protein Complexes with Accelerated Relaxation Dispersion Experiments in the Solid State.

机构信息

Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK.

出版信息

Sci Rep. 2019 Jul 31;9(1):11082. doi: 10.1038/s41598-019-47507-8.

Abstract

Solid state NMR is a powerful method to obtain information on the structure and dynamics of protein complexes that, due to solubility and size limitations, cannot be achieved by other methods. Here, we present an approach that allows the quantification of microsecond conformational exchange in large protein complexes by using a paramagnetic agent to accelerate N R relaxation dispersion measurements and overcome sensitivity limitations. The method is validated on crystalline GB1 and then applied to a >300 kDa precipitated complex of GB1 with full length human immunoglobulin G (IgG). The addition of a paramagnetic agent increased the signal to noise ratio per time unit by a factor of 5, which allowed full relaxation dispersion curves to be recorded on a sample containing less than 50 μg of labelled material in 5 and 10 days on 850 and 700 MHz spectrometers, respectively. We discover a similar exchange process across the β-sheet in GB1 in crystals and in complex with IgG. However, the slow motion observed for a number of residues in the α-helix of crystalline GB1 is not detected in the complex.

摘要

固态 NMR 是一种强大的方法,可以获取由于溶解度和尺寸限制而无法通过其他方法获得的蛋白质复合物的结构和动态信息。在这里,我们提出了一种方法,通过使用顺磁试剂来加速 N R 弛豫色散测量并克服灵敏度限制,从而可以对大蛋白质复合物中的微秒构象交换进行定量。该方法在结晶 GB1 上进行了验证,然后应用于 GB1 与全长人免疫球蛋白 G(IgG)的>300 kDa 沉淀复合物。顺磁试剂的添加使信噪比提高了 5 倍,这使得在 850 和 700 MHz 光谱仪上分别在 5 天和 10 天内可以在含有少于 50μg 标记材料的样品上记录完整的弛豫色散曲线。我们在晶体中和与 IgG 复合的 GB1 中发现了β-折叠中相似的交换过程。然而,在结晶 GB1 的α-螺旋中观察到的一些残基的缓慢运动在复合物中未被检测到。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7b3a/6668460/7a2e01cc3961/41598_2019_47507_Fig1_HTML.jpg

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