Instituto de Agrobiotecnología y Biología Molecular (IABIMO), Instituto Nacional de Tecnología Agropecuaria (INTA), Consejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET), Buenos Aires, Argentina.
Instituto de Microbiología y Zoología Agrícola, Instituto Nacional de Tecnología Agropecuaria (INTA), Consejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET), Buenos Aires, Argentina.
Int J Syst Evol Microbiol. 2019 Dec;69(12):3818-3823. doi: 10.1099/ijsem.0.003686.
A xylanolytic bacterial strain, named A59, was isolated from a forest soil consortium in southern Argentina. Strain A59 is a Gram-stain-positive, facultative anaerobic, endospore-forming and rod-shaped bacterium. Its optimal growth conditions are 30 °C (range, 28-37 °C), pH 7 (range, pH 5-10) and it tolerates up to 7 % of NaCl (range, 2-7 %). Chemotaxonomic analysis revealed that strain A59possesses -diaminopimelic acid in the cell wall. It contains menaquinone MK-7 as the predominant isoprenoid quinone and the major fatty acid is anteiso-C (35.1 %), with a moderate amount of C (6.9 %). According to 16S RNA gene sequence analysis, the isolate is phylogenetically placed in the same cluster as BCRC 17757 (99.7 % nucleotide sequence identity) and NBRC 13638 (99.1 %) and is closely related to A10b (98.8 %). However, phylogenetic studies based on the housekeeping gene placed A59 in a separate branch from all other related type strains. Furthermore, the results of whole genome average nucleotide identity analysis (gANI) with related type strains was lower than 91.10 % and the digital DNA-DNA hybridization value was lower than 44.30 %, which are below the threshold values for separating two species. The DNA G+C content was estimated as 46.09 mol%, based on genome sequencing. On the basis of these results, A59 represents a new species of the genus , and we propose the name sp. nov. The type strain is A59 (=DSM 107920=NCIMB 15123).
一株木聚糖降解细菌菌株 A59 从阿根廷南部的森林土壤共生体中分离得到。菌株 A59 为革兰氏阳性、兼性厌氧、产芽孢的杆状细菌。其最佳生长条件为 30°C(范围 28-37°C)、pH7(范围 pH5-10),可耐受高达 7%的 NaCl(范围 2-7%)。化学分类分析表明,菌株 A59 细胞壁中含有二氨基庚二酸。它含有 MK-7 作为主要的异戊烯醌,主要脂肪酸为 anteiso-C(35.1%),并有适量的 C(6.9%)。根据 16S RNA 基因序列分析,该分离株与 BCRC 17757(99.7%核苷酸序列同一性)和 NBRC 13638(99.1%)聚在同一聚类中,与 A10b(98.8%)最为接近。然而,基于看家基因的系统发育研究将 A59 置于与所有其他相关模式株不同的分支中。此外,与相关模式株的全基因组平均核苷酸同一性分析(gANI)结果低于 91.10%,数字 DNA-DNA 杂交值低于 44.30%,均低于区分两个物种的阈值。基于基因组测序,DNA G+C 含量估计为 46.09 mol%。基于这些结果,A59 代表了一个新的属种,我们提议将其命名为 sp. nov.。模式菌株为 A59(=DSM 107920=NCIMB 15123)。