Suppr超能文献

新属,新种,新种,新种,新种,从稻田土壤中分离出的四种铁还原细菌,以及将该属的三个物种重新分类为新属的成员 新属

gen. nov., sp. nov., sp. nov., sp. nov., sp. nov., Four Ferric-Reducing Bacteria Isolated From Paddy Soil, and Reclassification of Three Species of the Genus as Members of the Genus gen. nov.

作者信息

Xu Zhenxing, Masuda Yoko, Itoh Hideomi, Ushijima Natsumi, Shiratori Yutaka, Senoo Keishi

机构信息

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.

Bioproduction Research Institute, National Institute of Advanced Industrial Sciences and Technology, Hokkaido, Japan.

出版信息

Front Microbiol. 2019 Sep 25;10:2201. doi: 10.3389/fmicb.2019.02201. eCollection 2019.

Abstract

In paddy soil, bacteria from the family have been shown to strongly contribute to the biogeochemical cycle. However, no species with validly published names have been isolated from paddy soil. In this study, we isolated and characterized four novel ferric reducing bacteria in the family from the paddy soils of three different fields in Japan. The four strains, S43, Red53, S62, and Red111, were Gram-stain negative, strictly anaerobic, chemoheterotrophic, and motile with peritrichous flagella. Phylogenetic studies based on 16S rRNA gene sequences, five concatenated housekeeping genes (, , , , and ) and 92 concatenated core genes revealed that the four strains belong to the family and are most closely related to Bem (97.4-98.2%, 16S rRNA gene sequence similarities) and Dfr1 (97.1-98.0%). Genomic analysis with average nucleotide identity (ANI) and digital DNA-DNA hybridization (GGDC) calculations clearly distinguished the four isolated strains from other species of the family and indicated that strains S43, Red53, S62, and Red111 represent independent species, with values below the thresholds for species delineation. Chemotaxonomic characteristics, including major fatty acid and whole cell protein profiles, showed differences among the isolates and their closest relatives, which were consistent with the results of DNA fingerprints and physiological characterization. Additionally, each of the four isolates shared a low 16S rRNA gene sequence similarity (92.4%) and average amino acid identity (AAI) with the type strain of the type species . Overall, strains S43, Red53, S62, and Red111 represent four novel species, which we propose to classify in a novel genus of the family , and the names gen. nov., sp. nov. (type strain S43), sp. nov. (type strain Red53), sp. nov. (type strain S62), and sp. nov. (type strain Red111) are proposed. Based on phylogenetic and genomic analyses, we also propose the reclassification of as comb. nov., as comb. nov., and as comb. nov.

摘要

在稻田土壤中,[该科]的细菌已被证明对生物地球化学循环有重要贡献。然而,尚未从稻田土壤中分离出任何有效发表名称的[该科]物种。在本研究中,我们从日本三个不同田地的稻田土壤中分离并鉴定了四株新的铁还原细菌,它们属于[该科]。这四株菌株,S43、Red53、S62和Red111,革兰氏染色阴性,严格厌氧,化能异养,具周生鞭毛可运动。基于16S rRNA基因序列、五个串联的管家基因([基因名称1]、[基因名称2]、[基因名称3]、[基因名称4]和[基因名称5])以及92个串联的核心基因的系统发育研究表明,这四株菌株属于[该科],并且与[菌株名称1] Bem(16S rRNA基因序列相似性为97.4 - 98.2%)和[菌株名称2] Dfr1(97.1 - 98.0%)关系最为密切。通过平均核苷酸同一性(ANI)和数字DNA - DNA杂交(GGDC)计算进行的基因组分析清楚地将这四株分离菌株与[该科]的其他物种区分开来,并表明菌株S43、Red53、S62和Red111代表独立的物种,其值低于物种划分的阈值。化学分类学特征,包括主要脂肪酸和全细胞蛋白质谱,显示出分离株与其最密切相关菌株之间的差异,这与DNA指纹图谱和生理学特征的结果一致。此外,这四株分离株中的每一株与[模式种名称]的模式菌株的16S rRNA基因序列相似性(92.4%)和平均氨基酸同一性(AAI)都很低。总体而言,菌株S43、Red53、S62和Red111代表四个新物种,我们建议将它们归入[该科]的一个新属,并提出新属名[新属名1] gen. nov.、新种名[新种名1] sp. nov.(模式菌株S43)、[新种名2] sp. nov.(模式菌株Red53)、[新种名3] sp. nov.(模式菌株S62)和[新种名4] sp. nov.(模式菌株Red111)。基于系统发育和基因组分析,我们还建议将[物种名称1]重新分类为[新组合名称1] comb. nov.、[物种名称2]重新分类为[新组合名称2] comb. nov.以及[物种名称3]重新分类为[新组合名称3] comb. nov.

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d86f/6773877/ac4a35cc09b3/fmicb-10-02201-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验