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基于基因组序列的奈瑟菌科系统发育分析以及从欧美杨溃疡病有症状树皮中分离出的奈瑟菌科新属——皮层栖居菌属(Populibacter)新种的描述

Phylogenetic analysis of family Neisseriaceae based on genome sequences and description of Populibacter corticis gen. nov., sp. nov., a member of the family Neisseriaceae, isolated from symptomatic bark of Populus × euramericana canker.

作者信息

Li Yong, Xue Han, Sang Sheng-Qi, Lin Cai-Li, Wang Xi-Zhuo

机构信息

The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, China.

Agricultural High and New Technology Development Center of Puyang, Puyang, China.

出版信息

PLoS One. 2017 Apr 13;12(4):e0174506. doi: 10.1371/journal.pone.0174506. eCollection 2017.

DOI:10.1371/journal.pone.0174506
PMID:28406911
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5390963/
Abstract

Two Gram-stain negative aerobic bacterial strains were isolated from the bark tissue of Populus × euramericana. The novel isolates were investigated using a polyphasic approach including 16S rRNA gene sequencing, genome sequencing, average nucleotide identity (ANI) and both phenotypic and chemotaxonomic assays. The genome core gene sequence and 16S rRNA gene phylogenies suggest that the novel isolates are different from the genera Snodgrassella and Stenoxybacter. Additionally, the ANI, G+C content, main fatty acids and phospholipid profile data supported the distinctiveness of the novel strain from genus Snodgrassella. Therefore, based on the data presented, the strains constitute a novel species of a novel genus within the family Neisseriaceae, for which the name Populibacter corticis gen. nov., sp. nov. is proposed. The type strain is 15-3-5T (= CFCC 13594T = KCTC 42251T).

摘要

从欧美杨的树皮组织中分离出两株革兰氏染色阴性需氧细菌菌株。采用多相分类方法对新分离菌株进行了研究,包括16S rRNA基因测序、基因组测序、平均核苷酸同一性(ANI)以及表型和化学分类分析。基因组核心基因序列和16S rRNA基因系统发育分析表明,新分离菌株与斯诺德氏菌属和窄杆菌属不同。此外,ANI、G+C含量、主要脂肪酸和磷脂谱数据支持新菌株与斯诺德氏菌属的独特性。因此,根据所提供的数据,这些菌株构成了奈瑟菌科一个新属的一个新物种,为此提出了新属名Populibacter corticis gen. nov.,新种名Populibacter corticis sp. nov.。模式菌株为15-3-5T(=CFCC 13594T=KCTC 42251T)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d675/5390963/041b070aa1e1/pone.0174506.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d675/5390963/d5de96caeaed/pone.0174506.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d675/5390963/041b070aa1e1/pone.0174506.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d675/5390963/d5de96caeaed/pone.0174506.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d675/5390963/041b070aa1e1/pone.0174506.g002.jpg

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