Chen Yicheng, Jakary Angela, Avadiappan Sivakami, Hess Christopher P, Lupo Janine M
From the UCSF/UC Berkeley Graduate Program in Bioengineering, University of California, San Francisco and Berkeley, CA, USA; From the Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, CA, USA.
From the Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, CA, USA.
Neuroimage. 2020 Feb 15;207:116389. doi: 10.1016/j.neuroimage.2019.116389. Epub 2019 Nov 21.
Quantitative susceptibility mapping (QSM) is a powerful MRI technique that has shown great potential in quantifying tissue susceptibility in numerous neurological disorders. However, the intrinsic ill-posed dipole inversion problem greatly affects the accuracy of the susceptibility map. We propose QSMGAN: a 3D deep convolutional neural network approach based on a 3D U-Net architecture with increased receptive field of the input phase compared to the output and further refined the network using the WGAN with gradient penalty training strategy. Our method generates accurate QSM maps from single orientation phase maps efficiently and performs significantly better than traditional non-learning-based dipole inversion algorithms. The generalization capability was verified by applying the algorithm to an unseen pathology--brain tumor patients with radiation-induced cerebral microbleeds.
定量磁化率成像(QSM)是一种强大的磁共振成像(MRI)技术,在量化多种神经系统疾病中的组织磁化率方面显示出巨大潜力。然而,固有的不适定偶极子反演问题极大地影响了磁化率图的准确性。我们提出了QSMGAN:一种基于3D U-Net架构的3D深度卷积神经网络方法,与输出相比,输入相位的感受野增加,并使用具有梯度惩罚训练策略的WGAN进一步优化网络。我们的方法能够从单方向相位图高效生成准确的QSM图,并且在性能上显著优于传统的基于非学习的偶极子反演算法。通过将该算法应用于一种未见过的病理情况——患有放射性脑微出血的脑肿瘤患者,验证了其泛化能力。