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属于新属新皮菌属(Novipirellula gen. nov.)的三种细菌菌株的描述、玫瑰红嗜皮菌(Rhodopirellula rosea)和浅绿嗜皮菌(Rhodopirellula caenicola)的重新分类以及浮霉菌科系统发育标记rpoB属阈值的调整

Description of three bacterial strains belonging to the new genus Novipirellula gen. nov., reclassificiation of Rhodopirellula rosea and Rhodopirellula caenicola and readjustment of the genus threshold of the phylogenetic marker rpoB for Planctomycetaceae.

作者信息

Kallscheuer Nicolai, Wiegand Sandra, Peeters Stijn H, Jogler Mareike, Boedeker Christian, Heuer Anja, Rast Patrick, Jetten Mike S M, Rohde Manfred, Jogler Christian

机构信息

Department of Microbiology, Radboud Universiteit, Nijmegen, The Netherlands.

Leibniz Institute DSMZ, Brunswick, Germany.

出版信息

Antonie Van Leeuwenhoek. 2020 Dec;113(12):1779-1795. doi: 10.1007/s10482-019-01374-5. Epub 2019 Dec 19.

DOI:10.1007/s10482-019-01374-5
PMID:31853689
Abstract

Access to axenic cultures of Planctomycetes is crucial for further investigating their complex lifestyle, uncommon cell biology and primary and secondary metabolism. As a contribution to achieve this goal in the future, we here describe three strains belonging to the novel genus Novipirellula gen. nov. The strains were isolated from biotic and abiotic surfaces in the Baltic Sea and from the island Heligoland in the North Sea. Colony colours range from white to light pink. Cells are acorn-shaped and grew optimally at neutral pH and temperatures between 27 and 30 °C. Phylogenetic analyses revealed that the isolated strains represent three novel species belonging to a new genus, Novipirellula gen. nov. Beyond that, our analysis suggests that Rhodopirellula rosea LHWP3, Rhodopirellula caenicola YM26-125 and Rhodopirellula maiorica SM1 are also members of this novel genus. Splitting the current genus Rhodopirellula into a more strictly defined genus Rhodopirellula and Novipirellula also allowed readjusting the genus threshold value for the gene rpoB, encoding the RNA polymerase β-subunit, which is used as phylogenetic marker for Planctomycetales. A threshold range of 75.5-78% identity of the analysed partial rpoB sequence turned out to be reliable for differentiation of genera within the family Planctomycetaceae.

摘要

获得浮霉菌的无菌培养物对于进一步研究其复杂的生活方式、独特的细胞生物学以及初级和次级代谢至关重要。作为未来实现这一目标的一项贡献,我们在此描述了属于新属新皮氏菌属(Novipirellula gen. nov.)的三株菌株。这些菌株是从波罗的海的生物和非生物表面以及北海的黑尔戈兰岛分离得到的。菌落颜色从白色到浅粉色不等。细胞呈橡子形,在中性pH值和27至30°C的温度下生长最佳。系统发育分析表明,分离出的菌株代表了属于一个新属——新皮氏菌属(Novipirellula gen. nov.)的三个新物种。除此之外,我们的分析表明,玫瑰色红皮氏菌(Rhodopirellula rosea LHWP3)、泥色红皮氏菌(Rhodopirellula caenicola YM26 - 125)和马略卡红皮氏菌(Rhodopirellula maiorica SM1)也是这个新属的成员。将当前的红皮氏菌属(Rhodopirellula)划分为一个定义更严格的红皮氏菌属(Rhodopirellula)和新皮氏菌属(Novipirellula),也使得能够重新调整编码RNA聚合酶β亚基的rpoB基因的属阈值,该基因被用作浮霉菌目的系统发育标记。结果表明,分析的部分rpoB序列的同一性阈值范围在75.5 - 78%之间对于区分浮霉菌科内的属是可靠的。

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