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铜表面相关海洋生物膜功能多样性的宏基因组解析

Metagenomic Resolution of Functional Diversity in Copper Surface-Associated Marine Biofilms.

作者信息

Zhang Yimeng, Ma Yan, Zhang Ruiyong, Zhang Binbin, Zhai Xiaofan, Li Wangqiang, Xu Liting, Jiang Quantong, Duan Jizhou, Hou Baorong

机构信息

Key Laboratory of Marine Environmental Corrosion and Biofouling, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.

University of Chinese Academy of Sciences, Beijing, China.

出版信息

Front Microbiol. 2019 Dec 11;10:2863. doi: 10.3389/fmicb.2019.02863. eCollection 2019.

Abstract

We used metagenomic sequencing combined with morphological and chemical analyses to investigate microbial taxa and functions related to copper-resistance and microbiologically influenced corrosion in mature copper-associated biofilms in coastal seawater for 44 months. Facultative anaerobic microbes such as sp. were found to be the dominant groups on the copper surface. Genes related to stress response and possible heavy metal transport systems, especially RNA polymerase sigma factors () and putative ATP-binding cassette (ABC) transport system permease protein () were observed to be highly enriched in copper-associated biofilms, while genes encoding DNA-methyltransferase and RNA polymerase subunit were highly enriched in aluminum-associated biofilms and seawater planktonic cells, respectively. Moreover, copper-associated biofilms harbored abundant copper-resistance genes including , and , as well as abundant genes related to extracellular polymeric substances, indicating the presence of diverse copper-resistance patterns. The proportion of in copper-associated biofilms, key genes related to sulfide production, was as low as that in aluminum biofilm and seawater, which ruled out the possibility of microbial sulfide-induced copper-corrosion under field conditions. These results may fill knowledge gaps about the microbial functions of marine biofilms and their effects on toxic-metal corrosion.

摘要

我们采用宏基因组测序结合形态学和化学分析方法,对沿海海水中成熟的与铜相关生物膜进行了44个月的研究,以探究与耐铜性以及微生物影响腐蚀相关的微生物分类群和功能。发现诸如sp. 等兼性厌氧微生物是铜表面的主要菌群。观察到与应激反应和可能的重金属转运系统相关的基因,特别是RNA聚合酶σ因子()和假定的ATP结合盒(ABC)转运系统通透酶蛋白()在与铜相关的生物膜中高度富集,而编码DNA甲基转移酶和RNA聚合酶亚基的基因分别在与铝相关的生物膜和海水浮游细胞中高度富集。此外,与铜相关的生物膜含有丰富的耐铜基因,包括、和,以及与细胞外聚合物相关的丰富基因,表明存在多种耐铜模式。与铜相关的生物膜中与硫化物产生相关的关键基因的比例与铝生物膜和海水中的比例一样低,这排除了在现场条件下微生物硫化物诱导铜腐蚀的可能性。这些结果可能填补了关于海洋生物膜的微生物功能及其对有毒金属腐蚀影响的知识空白。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc96/6917582/9363d97c8509/fmicb-10-02863-g001.jpg

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