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基于基因组的 属所有物种比较以及 物种和 物种的状况

Genome-Based Comparison of All Species of the Genus , and Status of the Species and .

作者信息

Redl Stephanie, Poehlein Anja, Esser Carola, Bengelsdorf Frank R, Jensen Torbjørn Ø, Jendresen Christian B, Tindall Brian J, Daniel Rolf, Dürre Peter, Nielsen Alex T

机构信息

Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark.

Genomic and Applied Microbiology & Göttingen Genomics Laboratory, Georg-August University, Göttingen, Germany.

出版信息

Front Microbiol. 2020 Jan 17;10:3070. doi: 10.3389/fmicb.2019.03070. eCollection 2019.

Abstract

Fermentation of gases provides a promising opportunity for the production of biochemicals from renewable resources, which has resulted in a growing interest in acetogenic bacteria. Thermophilic organisms provide potential advantages for the fermentation of, e.g., syngas into for example volatile compounds, and the thermophiles and have become model organisms of acetogenic metabolism. The justification for the recognition of the closely related species has, however, recently been disputed. In order to expand knowledge on the genus, we have here genome sequenced a total of 12 different and strains. From the sequencing results, it became clear that DSM 1974 consists of at least two different strains. Two different strains were isolated in Lyngby and Ulm from a DSM 1974 culture obtained from the DSMZ (Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Brunswick, Germany). Phylogenetic analysis revealed a close relationship between all the sequenced genomes, suggesting that the two strains detected in the type strain of the species could not be distinguished at the species level from . Despite genetic similarities, differences in genomic features were observed between the strains. Differences in compounds that can serve as carbon and energy sources for selected strains were also identified. On the contrary, strain DSM 21394, currently still named , obviously represents a new species. In addition, based on genome analysis and comparison NMP, DSM 26217, and An10 cannot be distinguished at the species level. Thus, this comprehensive analysis provides a significantly increased knowledge of the genetic diversity of strains.

摘要

气体发酵为利用可再生资源生产生物化学品提供了一个很有前景的机会,这使得人们对产乙酸细菌的兴趣日益浓厚。嗜热生物在例如合成气发酵生成挥发性化合物等方面具有潜在优势,并且嗜热菌已成为产乙酸代谢的模式生物。然而,最近对于将密切相关的物种归为一类的合理性存在争议。为了扩展对该属的认识,我们在此对总共12种不同的菌株进行了全基因组测序。从测序结果来看,很明显DSM 1974至少由两种不同的菌株组成。从德国微生物和细胞培养物保藏中心(DSMZ,位于德国不伦瑞克的莱布尼茨研究所DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH)获得的DSM 1974培养物中,在灵比和乌尔姆分离出了两种不同的菌株。系统发育分析表明所有测序基因组之间关系密切,这表明在该物种模式菌株中检测到的两种菌株在物种水平上无法与其他菌株区分开来。尽管存在遗传相似性,但在菌株之间观察到了基因组特征的差异。还确定了所选菌株可作为碳源和能源的化合物的差异。相反,菌株DSM 21394,目前仍命名为,显然代表了一个新的物种。此外,基于基因组分析和比较,NMP、DSM 26217和An10在物种水平上无法区分。因此,这种全面分析显著增加了对菌株遗传多样性的认识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e56/6978639/8f4b9de24cc5/fmicb-10-03070-g001.jpg

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