Fan Xiao-Bin, Pang Rui, Li Wan-Xue, Ojha Abhishek, Li Dan, Zhang Wen-Qing
State Key Laboratory of Biocontrol and School of Life Sciences, Sun Yat-sen University, Guangzhou, China.
State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Open Laboratory of Applied Microbiology, Guangdong Institute of Microbiology, Guangzhou, China.
Front Physiol. 2020 Feb 18;11:106. doi: 10.3389/fphys.2020.00106. eCollection 2020.
During embryogenesis of insects, the morphological and transcriptional changes are important signatures to obtain a better understanding of insect patterning and evolution. The brown planthopper is a serious insect pest of rice plants, but its embryogenesis has not uncovered. Here, we described embryonic development process of the pest and found it belongs to an intermediate-germ mode. The RNA-seq data from different times (6, 30, 96, and 150 h, after egg laying) of embryogenesis were then analyzed, and a total of 10,895 genes were determined as differentially expressed genes (DEGs) based on pairwise comparisons. Afterward, 1,898 genes, differentially expressed in at least two comparisons of adjacent embryonic stages were divided into 10 clusters using K means cluster analysis (KMCA). Eight-gene modules were established using a weighted gene co-expression network analysis (WGCNA). Gene expression patterns in the different embryonic stages were identified by combining the functional enrichments of the stage-specific clusters and modules, which displayed the expression level and reprogramming of multiple developmental genes during embryogenesis. The "hub" genes at each embryonic stage with possible crucial roles were identified. Notably, we found a "center" set of genes that were related to overall membrane functions and might play important roles in the embryogenesis process. After parental RNAi of the , the hub gene, the embryo was observed as abnormal. Furthermore, some homologous genes in classic embryonic development processes and signaling pathways were also involved in embryogenesis of this insect. An improved comprehensive finding of embryogenesis within the reveals better information on genetic and genomic studies of embryonic development and might be a potential target for RNAi-based control of this insect pest.
在昆虫胚胎发育过程中,形态学和转录变化是更好地理解昆虫模式形成和进化的重要标志。褐飞虱是水稻的一种严重害虫,但其胚胎发育尚未被揭示。在此,我们描述了这种害虫的胚胎发育过程,发现它属于中间型胚模式。然后分析了胚胎发育不同时期(产卵后6、30、96和150小时)的RNA测序数据,基于成对比较共确定了10895个基因作为差异表达基因(DEG)。之后,对在至少两个相邻胚胎阶段比较中差异表达的1898个基因使用K均值聚类分析(KMCA)分为10个簇。使用加权基因共表达网络分析(WGCNA)建立了8个基因模块。通过结合阶段特异性簇和模块的功能富集来确定不同胚胎阶段的基因表达模式,这展示了胚胎发育过程中多个发育基因的表达水平和重编程。确定了每个胚胎阶段可能起关键作用的“枢纽”基因。值得注意的是,我们发现了一组与整体膜功能相关的“核心”基因,它们可能在胚胎发育过程中发挥重要作用。对枢纽基因进行亲代RNA干扰后,观察到胚胎异常。此外,经典胚胎发育过程和信号通路中的一些同源基因也参与了这种昆虫的胚胎发育。对胚胎发育的改进综合发现揭示了关于胚胎发育的遗传和基因组研究的更好信息,并且可能是基于RNA干扰控制这种害虫的潜在靶点。