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光学分辨率光声显微镜中基于深度学习的运动校正算法

Deep-learning-based motion-correction algorithm in optical resolution photoacoustic microscopy.

作者信息

Chen Xingxing, Qi Weizhi, Xi Lei

机构信息

School of Electronic Science and Engineering, University of Electronic Science and Technology of China, Chengdu, 610054, Sichuan, China.

Department of Biomedical Engineering, Southern University of Science and Technology, Shenzhen, 518055, Guangdong, China.

出版信息

Vis Comput Ind Biomed Art. 2019 Oct 29;2(1):12. doi: 10.1186/s42492-019-0022-9.

Abstract

In this study, we propose a deep-learning-based method to correct motion artifacts in optical resolution photoacoustic microscopy (OR-PAM). The method is a convolutional neural network that establishes an end-to-end map from input raw data with motion artifacts to output corrected images. First, we performed simulation studies to evaluate the feasibility and effectiveness of the proposed method. Second, we employed this method to process images of rat brain vessels with multiple motion artifacts to evaluate its performance for in vivo applications. The results demonstrate that this method works well for both large blood vessels and capillary networks. In comparison with traditional methods, the proposed method in this study can be easily modified to satisfy different scenarios of motion corrections in OR-PAM by revising the training sets.

摘要

在本研究中,我们提出了一种基于深度学习的方法来校正光学分辨率光声显微镜(OR-PAM)中的运动伪影。该方法是一个卷积神经网络,它建立了从带有运动伪影的输入原始数据到输出校正图像的端到端映射。首先,我们进行了模拟研究以评估所提出方法的可行性和有效性。其次,我们使用该方法处理具有多种运动伪影的大鼠脑血管图像,以评估其在体内应用中的性能。结果表明,该方法对大血管和毛细血管网络都有效。与传统方法相比,本研究中提出的方法可以通过修改训练集轻松修改,以满足OR-PAM中不同运动校正场景的需求。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/30f7/7099543/4985c64cfb89/42492_2019_22_Fig1_HTML.jpg

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