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量化深度学习的增量价值:在肺结节检测中的应用。

Quantifying the incremental value of deep learning: Application to lung nodule detection.

机构信息

Department of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado Anschutz Medical Campus, Aurora, CO, United States of America.

Department of Pulmonary Sciences and Critical Care Medicine, School of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, United States of America.

出版信息

PLoS One. 2020 Apr 14;15(4):e0231468. doi: 10.1371/journal.pone.0231468. eCollection 2020.

DOI:10.1371/journal.pone.0231468
PMID:32287288
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7156089/
Abstract

We present a case study for implementing a machine learning algorithm with an incremental value framework in the domain of lung cancer research. Machine learning methods have often been shown to be competitive with prediction models in some domains; however, implementation of these methods is in early development. Often these methods are only directly compared to existing methods; here we present a framework for assessing the value of a machine learning model by assessing the incremental value. We developed a machine learning model to identify and classify lung nodules and assessed the incremental value added to existing risk prediction models. Multiple external datasets were used for validation. We found that our image model, trained on a dataset from The Cancer Imaging Archive (TCIA), improves upon existing models that are restricted to patient characteristics, but it was inconclusive about whether it improves on models that consider nodule features. Another interesting finding is the variable performance on different datasets, suggesting population generalization with machine learning models may be more challenging than is often considered.

摘要

我们提出了一个案例研究,即在肺癌研究领域中实施具有增量价值框架的机器学习算法。机器学习方法在某些领域中经常被证明具有竞争力; 然而,这些方法的实施仍处于早期发展阶段。通常,这些方法仅与现有方法直接进行比较; 在这里,我们提出了一种通过评估增量价值来评估机器学习模型价值的框架。我们开发了一种用于识别和分类肺结节的机器学习模型,并评估了对现有风险预测模型的增量附加值。使用多个外部数据集进行验证。我们发现,我们的图像模型,基于来自癌症成像档案(TCIA)的数据集进行训练,改进了仅限于患者特征的现有模型,但尚不确定它是否改进了考虑结节特征的模型。另一个有趣的发现是在不同数据集上的性能差异很大,这表明机器学习模型的人群泛化可能比人们通常认为的更具挑战性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6735/7156089/812e83cbce24/pone.0231468.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6735/7156089/b468f00b175e/pone.0231468.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6735/7156089/3de4d1aaa890/pone.0231468.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6735/7156089/812e83cbce24/pone.0231468.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6735/7156089/b468f00b175e/pone.0231468.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6735/7156089/3de4d1aaa890/pone.0231468.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6735/7156089/812e83cbce24/pone.0231468.g003.jpg

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本文引用的文献

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Making Machine Learning Models Clinically Useful.让机器学习模型在临床上发挥作用。
JAMA. 2019 Oct 8;322(14):1351-1352. doi: 10.1001/jama.2019.10306.
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Quantifying the added value of new biomarkers: how and how not.量化新生物标志物的附加价值:方法与误区
Diagn Progn Res. 2018 Jul 11;2:14. doi: 10.1186/s41512-018-0037-2. eCollection 2018.
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Clinical Utility of Chromosomal Aneusomy in Individuals at High Risk of Lung Cancer.染色体非整倍体在肺癌高危人群中的临床应用。
J Thorac Oncol. 2017 Oct;12(10):1512-1523. doi: 10.1016/j.jtho.2017.06.008. Epub 2017 Jun 19.
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Transparent Reporting of a multivariable prediction model for Individual Prognosis or Diagnosis (TRIPOD): explanation and elaboration.透明报告个体预后或诊断的多变量预测模型(TRIPOD):解释和说明。
Ann Intern Med. 2015 Jan 6;162(1):W1-73. doi: 10.7326/M14-0698.
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Performance of ACR Lung-RADS in a clinical CT lung screening program.ACR肺部影像报告和数据系统(Lung-RADS)在临床CT肺部筛查项目中的表现。
J Am Coll Radiol. 2015 Mar;12(3):273-6. doi: 10.1016/j.jacr.2014.08.004. Epub 2014 Aug 28.
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Computer-aided detection system for lung cancer in computed tomography scans: review and future prospects.计算机断层扫描中肺癌的计算机辅助检测系统:综述与未来展望。
Biomed Eng Online. 2014 Apr 8;13:41. doi: 10.1186/1475-925X-13-41.
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