Division of Earth and Ecosystem Science, Desert Research Institute, Reno, NV 89512, USA.
Department of Chemistry, University of South Florida, Tampa, FL 33620, USA.
Mar Drugs. 2020 Jun 2;18(6):298. doi: 10.3390/md18060298.
Polar marine ecosystems hold the potential for bioactive compound biodiscovery, based on their untapped macro- and microorganism diversity. Characterization of polar benthic marine invertebrate-associated microbiomes is limited to few studies. This study was motivated by our interest in better understanding the microbiome structure and composition of the ascidian, , in which palmerolide A (PalA), a bioactive macrolide with specificity against melanoma, was isolated. PalA bears structural resemblance to a hybrid nonribosomal peptide-polyketide that has similarities to microbially-produced macrolides. We conducted a spatial survey to assess both PalA levels and microbiome composition in in a region of the Antarctic Peninsula near Anvers Island (64° 46'S, 64° 03'W). PalA was ubiquitous and abundant across a collection of 21 ascidians (3 subsamples each) sampled from seven sites across the Anvers Island Archipelago. The microbiome composition (V3-V4 16S rRNA gene sequence variants) of these 63 samples revealed a core suite of 21 bacterial amplicon sequence variants (ASVs)-20 of which were distinct from regional bacterioplankton. ASV co-occurrence analysis across all 63 samples yielded subgroups of taxa that may be interacting biologically (interacting subsystems) and, although the levels of PalA detected were not found to correlate with specific sequence variants, the core members appeared to occur in a preferred optimum and tolerance range of PalA levels. These results, together with an analysis of the biosynthetic potential of related microbiome taxa, describe a conserved, high-latitude core microbiome with unique composition and substantial promise for natural product biosynthesis that likely influences the ecology of the holobiont.
极地海洋生态系统具有生物活性化合物生物发现的潜力,这基于它们未被开发的宏和微生物多样性。极地底栖海洋无脊椎动物相关微生物组的特征仅限于少数研究。这项研究的动机是我们对更好地了解 的微生物组结构和组成的兴趣,在该物种中分离出了生物活性大环内酯 Palmerolide A (PalA),它对黑色素瘤具有特异性。PalA 与一种杂合非核糖体肽 - 聚酮结构相似,与微生物产生的大环内酯具有相似性。我们进行了一项空间调查,以评估南极半岛附近安弗斯岛(64°46'S,64°03'W)地区 的 PalA 水平和微生物组组成。PalA 在从安弗斯岛群岛七个地点采集的 21 个 样本(每个样本 3 个亚样本)中普遍存在且丰富。这些 63 个样本的微生物组组成(V3-V4 16S rRNA 基因序列变体)揭示了一组核心 21 个细菌扩增子序列变体(ASVs)-其中 20 个与区域细菌浮游生物不同。对所有 63 个样本的 ASV 共现分析产生了可能在生物学上相互作用的分类群亚组(相互作用的子系统),尽管检测到的 PalA 水平与特定序列变体没有相关性,但核心成员似乎出现在 PalA 水平的优选最佳和耐受范围内。这些结果,加上对相关微生物组分类群生物合成潜力的分析,描述了一个保守的、高纬度核心微生物组,具有独特的组成,具有很大的天然产物生物合成潜力,可能影响整个生物群落的生态。