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Zn(II)Cys锌簇编码基因家族的全基因组特征分析及其在发育阶段和热胁迫下的表达分析。

Genome-wide characterization of the Zn(II)Cys zinc cluster-encoding gene family in and expression analyses of this family during developmental stages and under heat stress.

作者信息

Hou Zhihao, Chen Qiang, Zhao Mengran, Huang Chenyang, Wu Xiangli

机构信息

Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.

Key Laboratory of Microbial Resources, Ministry of Agriculture and Rural Affairs, Beijing, China.

出版信息

PeerJ. 2020 Jun 12;8:e9336. doi: 10.7717/peerj.9336. eCollection 2020.

DOI:10.7717/peerj.9336
PMID:32566411
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7295025/
Abstract

is one of the most widely cultivated mushrooms in China. The regulatory mechanisms of fruiting body formation and the response to heat stress in are main research focuses. The Zn(II)Cys family is one of the largest families of transcriptional factors and plays important roles in multiple biological processes in fungi. In this study, we identified 66 zinc cluster proteins in (PoZCPs) through a genome-wide search. The PoZCPs were classified into 15 types according to their zinc cluster domain. Physical and chemical property analyses showed a huge diversity among the PoZCPs. Phylogenetic analysis of PoZCPs classified these proteins into six groups and conserved motif combinations and similar gene structures were observed in each group. The expression profiles of these PoZCP genes during different developmental stages and under heat stress were further investigated by RNA-sequencing (RNA-seq), revealing diverse expression patterns. A total of 13 PoZCPs that may participate in development or the heat stress response were selected for validation of their expression levels through real-time quantitative PCR (RT-qPCR) analysis, and some developmental stage-specific and heat stress-responsive candidates were identified. The findings contribute to our understanding of the roles and regulatory mechanisms of ZCPs in .

摘要

是中国栽培最广泛的蘑菇之一。其子实体形成的调控机制以及对热胁迫的响应是主要研究重点。锌(II)半胱氨酸家族是最大的转录因子家族之一,在真菌的多种生物学过程中发挥重要作用。在本研究中,我们通过全基因组搜索在中鉴定出66个锌簇蛋白(PoZCPs)。PoZCPs根据其锌簇结构域分为15种类型。理化性质分析表明PoZCPs之间存在巨大差异。PoZCPs的系统发育分析将这些蛋白分为六组,并且在每组中观察到保守的基序组合和相似的基因结构。通过RNA测序(RNA-seq)进一步研究了这些PoZCP基因在不同发育阶段和热胁迫下的表达谱,揭示了不同的表达模式。总共选择了13个可能参与发育或热胁迫响应的PoZCPs,通过实时定量PCR(RT-qPCR)分析验证其表达水平,并鉴定了一些发育阶段特异性和热胁迫响应候选基因。这些发现有助于我们了解ZCPs在中的作用和调控机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8bbe/7295025/3d269377d616/peerj-08-9336-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8bbe/7295025/6fa24459d229/peerj-08-9336-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8bbe/7295025/0650f430d0a0/peerj-08-9336-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8bbe/7295025/07c9aa2253c4/peerj-08-9336-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8bbe/7295025/925ebdd702cc/peerj-08-9336-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8bbe/7295025/3d269377d616/peerj-08-9336-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8bbe/7295025/6fa24459d229/peerj-08-9336-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8bbe/7295025/0650f430d0a0/peerj-08-9336-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8bbe/7295025/07c9aa2253c4/peerj-08-9336-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8bbe/7295025/925ebdd702cc/peerj-08-9336-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8bbe/7295025/3d269377d616/peerj-08-9336-g005.jpg

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