The Rowett Institute, University of Aberdeen, Foresterhill, Aberdeen, United Kingdom.
Biomathematics & Statistics Scotland, Aberdeen, United Kingdom.
mBio. 2020 Jul 14;11(4):e00886-20. doi: 10.1128/mBio.00886-20.
We investigated the requirement of 15 human butyrate-producing gut bacterial strains for eight B vitamins and the proteinogenic amino acids by a combination of genome sequence analysis and growth experiments. The species and were auxotrophic for most of the vitamins and the amino acid tryptophan. Within the , most species were prototrophic for all amino acids and several vitamins, but biotin auxotrophy was widespread. In addition, most of the strains belonging to and spp., but few of the other strains, were auxotrophic for thiamine and folate. Synthetic coculture experiments of five thiamine or folate auxotrophic strains with different prototrophic bacteria in the absence and presence of different vitamin concentrations were carried out. This demonstrated that cross-feeding between bacteria does take place and revealed differences in cross-feeding efficiency between prototrophic strains. Vitamin-independent growth stimulation in coculture compared to monococulture was also observed, in particular for A2-165, suggesting that it benefits from the provision of other growth factors from community members. The presence of multiple vitamin auxotrophies in the most abundant butyrate-producing species found in the healthy human colon indicates that these bacteria depend upon vitamins supplied from the diet or via cross-feeding from other members of the microbial community. Microbes in the intestinal tract have a strong influence on human health. Their fermentation of dietary nondigestible carbohydrates leads to the formation of health-promoting short-chain fatty acids, including butyrate, which is the main fuel for the colonic wall and has anticarcinogenic and anti-inflammatory properties. A good understanding of the growth requirements of butyrate-producing bacteria is important for the development of efficient strategies to promote these microbes in the gut, especially in cases where their abundance is altered. The demonstration of the inability of several dominant butyrate producers to grow in the absence of certain vitamins confirms the results of previous analyses. Furthermore, establishing that strains prototrophic for thiamine or folate (butyrate producers and non-butyrate producers) were able to stimulate growth and affect the composition of auxotrophic synthetic communities suggests that the provision of prototrophic bacteria that are efficient cross feeders may stimulate butyrate-producing bacteria under certain conditions.
我们通过基因组序列分析和生长实验相结合,研究了 15 株人类丁酸产生肠道细菌对 8 种 B 族维生素和蛋白质氨基酸的需求。种和种几乎需要所有维生素和氨基酸色氨酸。在种内,大多数物种对所有氨基酸和几种维生素都是原养型的,但生物素缺陷很普遍。此外,大多数属于和种的菌株以及少数其他菌株对硫胺素和叶酸有缺陷。在不存在和存在不同维生素浓度的情况下,将五种硫胺素或叶酸缺陷型菌株与不同原养型细菌进行合成共培养实验。这表明细菌之间确实存在交叉喂养,并且原养型菌株之间的交叉喂养效率存在差异。与单培养相比,在共培养中也观察到维生素非依赖性生长刺激,特别是对于 A2-165,这表明它受益于来自社区成员提供的其他生长因子。在健康人体结肠中发现的最丰富的丁酸产生种中存在多种维生素缺陷表明,这些细菌依赖于饮食中提供的维生素或通过与微生物群落其他成员的交叉喂养。肠道内的微生物对人类健康有很大的影响。它们对膳食纤维的发酵导致健康促进的短链脂肪酸的形成,包括丁酸,丁酸是结肠壁的主要燃料,具有抗癌和抗炎特性。了解丁酸产生菌的生长需求对于开发促进肠道内这些微生物的有效策略非常重要,特别是在它们的丰度发生改变的情况下。证明几种主要丁酸生产者在缺乏某些维生素的情况下无法生长的结果证实了先前分析的结果。此外,确定对硫胺素或叶酸原养型(丁酸产生菌和非丁酸产生菌)的菌株能够刺激生长并影响缺陷型合成群落的组成表明,在某些条件下,提供高效交叉喂养的原养型细菌可能会刺激丁酸产生菌。
Environ Microbiol. 2016-12-8
Appl Environ Microbiol. 2024-1-24
Appl Environ Microbiol. 2020-10-15
Appl Environ Microbiol. 2004-10
Front Nutr. 2025-7-31
Food Sci Nutr. 2025-8-11
FEMS Microbiol Ecol. 2025-7-14
J Clin Invest. 2025-6-2
Antioxidants (Basel). 2025-4-23
Environ Microbiol. 2020-6
Trends Mol Med. 2020-2
Front Microbiol. 2019-7-2
Front Microbiol. 2019-6-12
Curr Opin Biotechnol. 2019-4-6
BMC Genomics. 2019-3-12
Mol Syst Biol. 2018-6-21