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利用转录逻辑门来调节细胞外电子转移。

Tuning Extracellular Electron Transfer by Using Transcriptional Logic Gates.

机构信息

McKetta Department of Chemical Engineering, University of Texas at Austin, Austin, Texas 78712, United States.

Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas 78712, United States.

出版信息

ACS Synth Biol. 2020 Sep 18;9(9):2301-2315. doi: 10.1021/acssynbio.9b00517. Epub 2020 Aug 17.

DOI:10.1021/acssynbio.9b00517
PMID:32786362
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7816516/
Abstract

Extracellular electron transfer (EET) pathways, such as those in the bacterium , interface cellular metabolism with a variety of redox-driven applications. However, designer control over EET flux in has proven challenging because a functional understanding of its EET pathway proteins and their effect on engineering parametrizations (e.g., response curves, dynamic range) is generally lacking. To address this, we systematically altered transcription and translation of single genes encoding parts of the primary EET pathway of , CymA/MtrCAB, and examined how expression differences affected model-fitted parameters for Fe(III) reduction kinetics. Using a suite of plasmid-based inducible circuits maintained by appropriate knockout strains, we pinpointed construct/strain pairings that expressed , , and with maximal dynamic range of Fe(III) reduction rate. These optimized EET gene constructs were employed to create Buffer and NOT gate architectures that predictably turn on and turn off EET flux, respectively, in response to isopropyl β-D-1-thiogalactopyranoside (IPTG). Furthermore, we found that response functions generated by these logic gates (i.e., EET activity vs inducer concentration) were comparable to those generated by conventional synthetic biology circuits, where fluorescent reporters are the output. Our results provide insight on programming EET activity with transcriptional logic gates and suggest that previously developed transcriptional circuitry can be adapted to predictably control EET flux.

摘要

细胞外电子传递 (EET) 途径,如细菌中的途径,将细胞代谢与各种氧化还原驱动的应用联系起来。然而,已经证明,对 中 EET 通量的设计控制具有挑战性,因为对其 EET 途径蛋白及其对工程参数化(例如,响应曲线、动态范围)的影响的功能理解通常是缺乏的。为了解决这个问题,我们系统地改变了编码 主要 EET 途径的单个基因的转录和翻译,检查了表达差异如何影响 Fe(III)还原动力学的模型拟合参数。使用一系列由适当的 knockout 菌株维持的基于质粒的诱导电路,我们确定了表达 、 和 的质粒/菌株组合,其 Fe(III)还原率的动态范围最大。这些优化的 EET 基因构建体被用于创建 Buffer 和 NOT 门架构,分别可预测地开启和关闭 EET 通量,以响应异丙基 β-D-1-硫代半乳糖吡喃糖苷 (IPTG)。此外,我们发现这些逻辑门产生的响应函数(即,EET 活性与诱导剂浓度)与传统合成生物学电路产生的响应函数相当,其中荧光报告器是输出。我们的结果提供了使用转录逻辑门编程 EET 活性的见解,并表明以前开发的转录电路可以适应可预测地控制 EET 通量。

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