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sp. nov. 和 sp. nov.,从洞穴中的方解石月乳沉积物中分离得到。

sp. nov. and sp. nov., isolated from calcite moonmilk deposits from caves.

机构信息

Department of Experimental Biology, Czech Collection of Microorganisms, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic.

Department of Experimental Biology, Section of Genetics and Molecular Biology, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic.

出版信息

Int J Syst Evol Microbiol. 2020 Sep;70(9):5131-5140. doi: 10.1099/ijsem.0.004393.

DOI:10.1099/ijsem.0.004393
PMID:32821035
Abstract

A taxonomic study of two fluorescent strains (HJ/4 and SJ/9/1) isolated from calcite moonmilk samples obtained from two caves in the Moravian Karst in the Czech Republic was carried out. Results of initial 16S rRNA gene sequence analysis assigned both strains into the genus and showed 8H1 as their closest neighbour with 99.8 and 99.7 % 16S rRNA gene similarities to strains HJ/4 and SJ/9/1, respectively. Subsequent sequence analysis of , and housekeeping genes confirmed the highest similarity of both isolates to 8H1, but phylogeny and sequences similarities implied that they are representatives of two novel species within the genus . Further study comprising whole-genome sequencing followed by average nucleotide identity and digital DNA-DNA hybridization calculations, repetitive sequence-based PCR fingerprinting with the REP and ERIC primers, automated ribotyping with the RI restriction endonuclease, cellular fatty acid analysis, quinone and polar lipid characterization, and extensive biotyping confirmed clear separation of both analysed strains from the remaining species and showed that they represent two novel species within the genus for which the names sp. nov. (type strain HJ/4=CCM 7891=LMG 27930) and sp. nov. (type strain SJ/9/1=CCM 7893=LMG 27931) are suggested.

摘要

对从捷克共和国摩拉维亚喀斯特地区两个洞穴中获得的方解石乳样中分离出的两种荧光菌株(HJ/4 和 SJ/9/1)进行了分类学研究。16S rRNA 基因序列分析的初步结果将两种菌株都归入了 属,并显示与菌株 HJ/4 和 SJ/9/1 的相似度分别为 99.8%和 99.7%,与 8H1 最为接近。随后对 、 和 看家基因的序列分析进一步证实了这两种分离株与 8H1 的最高相似度,但系统发育和序列相似性表明它们是 属内两个新种的代表。进一步的研究包括全基因组测序,然后进行平均核苷酸同一性和数字 DNA-DNA 杂交计算、基于重复序列的 PCR 指纹分析(使用 REP 和 ERIC 引物)、RI 限制性内切酶的自动核糖体分型、细胞脂肪酸分析、醌和极性脂特征分析以及广泛的生物分型,这些研究证实了两种分析菌株与其余 种之间的明显分离,并表明它们代表了 属内的两个新种,建议将其命名为 sp. nov.(模式菌株 HJ/4=CCM 7891=LMG 27930)和 sp. nov.(模式菌株 SJ/9/1=CCM 7893=LMG 27931)。

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