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核糖体介导的长链碳和环状氨基酸在体外聚合成长肽。

Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro.

机构信息

Department of Chemical and Biological Engineering and Center for Synthetic Biology, Northwestern University, Evanston, IL, 60208, USA.

Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.

出版信息

Nat Commun. 2020 Aug 27;11(1):4304. doi: 10.1038/s41467-020-18001-x.

Abstract

Ribosome-mediated polymerization of backbone-extended monomers into polypeptides is challenging due to their poor compatibility with the translation apparatus, which evolved to use α-L-amino acids. Moreover, mechanisms to acylate (or charge) these monomers to transfer RNAs (tRNAs) to make aminoacyl-tRNA substrates is a bottleneck. Here, we rationally design non-canonical amino acid analogs with extended carbon chains (γ-, δ-, ε-, and ζ-) or cyclic structures (cyclobutane, cyclopentane, and cyclohexane) to improve tRNA charging. We then demonstrate site-specific incorporation of these non-canonical, backbone-extended monomers at the N- and C- terminus of peptides using wild-type and engineered ribosomes. This work expands the scope of ribosome-mediated polymerization, setting the stage for new medicines and materials.

摘要

核糖体介导的将骨架延伸单体聚合成长肽具有挑战性,因为它们与翻译装置的兼容性很差,而翻译装置是进化来使用α-L-氨基酸的。此外,将这些单体酰化(或电荷)以将转移 RNA(tRNA)转移到形成氨酰-tRNA 底物的机制是一个瓶颈。在这里,我们合理设计了具有扩展碳链(γ-、δ-、ε-和 ζ-)或环状结构(环丁烷、环戊烷和环己烷)的非天然氨基酸类似物,以提高 tRNA 的充电效率。然后,我们使用野生型和工程核糖体证明了这些非天然的、骨架延伸的单体在肽的 N-和 C-末端的定点掺入。这项工作扩展了核糖体介导聚合的范围,为新型药物和材料奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4797/7452890/4bb9b329febf/41467_2020_18001_Fig1_HTML.jpg

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