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火星、木卫二及微重力条件下的纳米孔测序。

Nanopore sequencing at Mars, Europa, and microgravity conditions.

作者信息

Carr Christopher E, Bryan Noelle C, Saboda Kendall N, Bhattaru Srinivasa A, Ruvkun Gary, Zuber Maria T

机构信息

Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA USA.

Department of Molecular Biology, Massachusetts General Hospital, Boston, MA USA.

出版信息

NPJ Microgravity. 2020 Sep 7;6:24. doi: 10.1038/s41526-020-00113-9. eCollection 2020.

DOI:10.1038/s41526-020-00113-9
PMID:32964110
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7477557/
Abstract

Nanopore sequencing, as represented by Oxford Nanopore Technologies' MinION, is a promising technology for in situ life detection and for microbial monitoring including in support of human space exploration, due to its small size, low mass (100 g) and low power (1 W). Now ubiquitous on Earth and previously demonstrated on the International Space Station (ISS), nanopore sequencing involves translocation of DNA through a biological nanopore on timescales of milliseconds per base. Nanopore sequencing is now being done in both controlled lab settings as well as in diverse environments that include ground, air, and space vehicles. Future space missions may also utilize nanopore sequencing in reduced gravity environments, such as in the search for life on Mars (Earth-relative gravito-inertial acceleration (GIA)  = 0.378), or at icy moons such as Europa ( = 0.134) or Enceladus ( = 0.012). We confirm the ability to sequence at Mars as well as near Europa or Lunar ( = 0.166) and lower levels, demonstrate the functionality of updated chemistry and sequencing protocols under parabolic flight, and reveal consistent performance across level, during dynamic accelerations, and despite vibrations with significant power at translocation-relevant frequencies. Our work strengthens the use case for nanopore sequencing in dynamic environments on Earth and in space, including as part of the search for nucleic-acid based life beyond Earth.

摘要

以牛津纳米孔技术公司的MinION为代表的纳米孔测序,是一种很有前景的技术,可用于原位生命探测和微生物监测,包括支持人类太空探索,因为它体积小、质量轻(约100克)、功耗低(约1瓦)。纳米孔测序如今在地球上无处不在,并且此前已在国际空间站(ISS)上得到验证,它涉及DNA在每个碱基毫秒级的时间尺度上通过生物纳米孔的易位过程。目前,纳米孔测序既可以在受控的实验室环境中进行,也可以在包括地面、空中和太空飞行器在内的各种环境中进行。未来的太空任务也可能在微重力环境中利用纳米孔测序,比如在火星上寻找生命(相对于地球的重力惯性加速度(GIA)=0.378),或者在木卫二(=0.134)或土卫二(=0.012)等冰卫星上。我们证实了在火星以及木卫二附近或月球(=0.166)及更低重力水平下进行测序的能力,展示了在抛物线飞行中更新的化学方法和测序方案的功能,并揭示了在不同重力水平、动态加速过程中以及尽管存在与易位相关频率的显著功率振动情况下的一致性能。我们的工作强化了纳米孔测序在地球和太空动态环境中的应用案例,包括作为寻找地外基于核酸的生命的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/769a/7477557/713564c3db44/41526_2020_113_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/769a/7477557/6dc49e510689/41526_2020_113_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/769a/7477557/8339cc9d21b4/41526_2020_113_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/769a/7477557/555a0be25185/41526_2020_113_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/769a/7477557/713564c3db44/41526_2020_113_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/769a/7477557/6dc49e510689/41526_2020_113_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/769a/7477557/8339cc9d21b4/41526_2020_113_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/769a/7477557/555a0be25185/41526_2020_113_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/769a/7477557/713564c3db44/41526_2020_113_Fig4_HTML.jpg

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NanoCoV19: An analytical pipeline for rapid detection of severe acute respiratory syndrome coronavirus 2.NanoCoV19:一种用于快速检测严重急性呼吸综合征冠状病毒2的分析流程。
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