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AIDEx - 一个用于脓毒症实时预测的开源平台及将机器学习算法投入生产的案例研究

AIDEx - An Open-source Platform for Real-Time Forecasting Sepsis and A Case Study on Taking ML Algorithms to Production.

作者信息

Amrollahi Fatemeh, Shashikumar Supreeth Prajwal, Kathiravelu Pradeeban, Sharma Ashish, Nemati Shamim

出版信息

Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul;2020:5610-5614. doi: 10.1109/EMBC44109.2020.9175947.

DOI:10.1109/EMBC44109.2020.9175947
PMID:33019249
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10805333/
Abstract

Sepsis, a dysregulated immune response to infection, has been the leading cause of morbidity and mortality in critically ill patients. Multiple studies have demonstrated improved survival outcomes when early treatment is initiated for septic patients. In our previous work, we developed a real-time machine learning algorithm capable of predicting onset of sepsis four to six hours prior to clinical recognition. In this work, we develop AIDEx, an open-source platform that consumes data as FHIR resources. It is capable of consuming live patient data, securely transporting it into a cloud environment, and monitoring patients in real-time. We build AIDEx as an EHR vendor-agnostic open-source platform that can be easily deployed in clinical environments. Finally, the computation of the sepsis risk scores uses a common design pattern that is seen in streaming clinical informatics and predictive analytics applications. AIDEx provides a comprehensive case study in the design and development of a production-ready ML platform that integrates with Healthcare IT systems.

摘要

脓毒症是一种对感染的免疫反应失调,一直是重症患者发病和死亡的主要原因。多项研究表明,对脓毒症患者尽早进行治疗可改善生存结果。在我们之前的工作中,我们开发了一种实时机器学习算法,能够在临床识别前四至六小时预测脓毒症的发作。在这项工作中,我们开发了AIDEx,这是一个以FHIR资源形式消费数据的开源平台。它能够消费实时患者数据,将其安全传输到云环境中,并实时监测患者。我们将AIDEx构建为一个与电子健康记录(EHR)供应商无关的开源平台,可轻松部署在临床环境中。最后,脓毒症风险评分的计算使用了一种在流式临床信息学和预测分析应用中常见的设计模式。AIDEx提供了一个全面的案例研究,涉及一个可投入生产的ML平台的设计和开发,该平台与医疗保健信息技术系统集成。

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Optimizing the Implementation of Clinical Predictive Models to Minimize National Costs: Sepsis Case Study.优化临床预测模型的实施以最小化国家成本:脓毒症案例研究。
J Med Internet Res. 2023 Feb 13;25:e43486. doi: 10.2196/43486.
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New Standards for Clinical Decision Support: A Survey of The State of Implementation.临床决策支持新规范:实施现状调查。
Yearb Med Inform. 2021 Aug;30(1):159-171. doi: 10.1055/s-0041-1726502. Epub 2021 Sep 3.

本文引用的文献

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The challenge of implementing AI models in the ICU.在重症监护病房(ICU)中实施人工智能模型面临的挑战。
Lancet Respir Med. 2018 Dec;6(12):886-888. doi: 10.1016/S2213-2600(18)30412-0. Epub 2018 Nov 8.
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Sepsis early warning scoring systems: The ideal tool remains elusive!脓毒症早期预警评分系统:理想工具仍难以寻觅!
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An Interpretable Machine Learning Model for Accurate Prediction of Sepsis in the ICU.一种用于 ICU 中脓毒症准确预测的可解释机器学习模型。
Crit Care Med. 2018 Apr;46(4):547-553. doi: 10.1097/CCM.0000000000002936.
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Cancer Res. 2017 Nov 1;77(21):e79-e82. doi: 10.1158/0008-5472.CAN-17-0316.
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Multiscale network representation of physiological time series for early prediction of sepsis.用于脓毒症早期预测的生理时间序列的多尺度网络表示。
Physiol Meas. 2017 Nov 30;38(12):2235-2248. doi: 10.1088/1361-6579/aa9772.
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Incidence and Trends of Sepsis in US Hospitals Using Clinical vs Claims Data, 2009-2014.2009 - 2014年美国医院中使用临床数据与索赔数据的脓毒症发病率及趋势
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Creating an automated trigger for sepsis clinical decision support at emergency department triage using machine learning.利用机器学习在急诊科分诊时创建用于脓毒症临床决策支持的自动触发机制。
PLoS One. 2017 Apr 6;12(4):e0174708. doi: 10.1371/journal.pone.0174708. eCollection 2017.
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Prediction of Sepsis in the Intensive Care Unit With Minimal Electronic Health Record Data: A Machine Learning Approach.利用最少电子健康记录数据预测重症监护病房中的脓毒症:一种机器学习方法。
JMIR Med Inform. 2016 Sep 30;4(3):e28. doi: 10.2196/medinform.5909.
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Prospective evaluation of an automated method to identify patients with severe sepsis or septic shock in the emergency department.急诊科中一种用于识别严重脓毒症或脓毒性休克患者的自动化方法的前瞻性评估。
BMC Emerg Med. 2016 Aug 22;16(1):31. doi: 10.1186/s12873-016-0095-0.
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MIMIC-III, a freely accessible critical care database.MIMIC-III,一个免费获取的重症监护数据库。
Sci Data. 2016 May 24;3:160035. doi: 10.1038/sdata.2016.35.